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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCAAGTTGGAAATTCGCTAAAGGATAAATTATCTCTTTCTCATGGAAGCTGCTCTTCTGACAAGTTAATGGAAAGTTTACTTGTCAGGCATTATCCACGgtatattcttcttactttaacatttgttgatgtggattaaatatattttcagttgcttgttcgttattttaccactccattatatatctttttgtttttg...

Basic information

species Vitis vinifera
transcript Vv14s0036g01460.t01
intron # 24
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32269482|gb|CD718641.1|CD718641
EST:     TGCTCTTCTGACAAGTTAATGGAAAGTTTACTTGTCAGGCATTATCCACG                         GTGGATTGCTAACTACCATGAACATGAGACCCTTCTGCAAGAGAATGAAGA
genomic: TGCTCTTCTGACAAGTTAATGGAAAGTTTACTTGTCAGGCATTATCCACGgtatattctt ... ggacattcagGTGGATTGCTAACTACCATGAACATGAGACCCTTCTGCAAGAGAATGAAGA
EST: gi|29785711|gb|CB342999.2|CB342999
EST:     TGCTCTTCTGACAAGTTAATGGAAAGTTTACTTGTCAGGCATTATCCACG                         GTGGATTGCGAACTACCATGAACATGAGACCCTTCTGCAAGAGAATGAAGA
genomic: TGCTCTTCTGACAAGTTAATGGAAAGTTTACTTGTCAGGCATTATCCACGgtatattctt ... ggacattcagGTGGATTGCTAACTACCATGAACATGAGACCCTTCTGCAAGAGAATGAAGA
EST: gi|161713628|gb|FC062542.1|FC062542
EST:     TGCTCTTCTGACAAGTTAATGGAAAGTTTACTTGTCAGGCATTATCCACG                         GTGGATTGCGAACTACCATGAACATGAGACCCTTCTGCAAGAGAATGAAGA
genomic: TGCTCTTCTGACAAGTTAATGGAAAGTTTACTTGTCAGGCATTATCCACGgtatattctt ... ggacattcagGTGGATTGCTAACTACCATGAACATGAGACCCTTCTGCAAGAGAATGAAGA
EST: gi|28964027|gb|CB343060.1|CB343060
EST:     TGCTCTTCTGACAAGTTAATGGAAAGTTTACTTGTCAGGCATTATCCACG                         GTGGATTGCGAACTACCATGAACATGAGACCCTTCTGCAAGAGAATGAAGA
genomic: TGCTCTTCTGACAAGTTAATGGAAAGTTTACTTGTCAGGCATTATCCACGgtatattctt ... ggacattcagGTGGATTGCTAACTACCATGAACATGAGACCCTTCTGCAAGAGAATGAAGA
EST: gi|32267667|gb|CD716630.1|CD716630
EST:     TGCTCTTCTGACAAGTTAATGGAAAGTTTACTTGTCAGGCATTATCCACG                         GTGGATTGCTAACTACCATGAACATGAGACCCTTCTGCAAGAGAATGAAGA
genomic: TGCTCTTCTGACAAGTTAATGGAAAGTTTACTTGTCAGGCATTATCCACGgtatattctt ... ggacattcagGTGGATTGCTAACTACCATGAACATGAGACCCTTCTGCAAGAGAATGAAGA