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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAAAATCTGGATGGCGTAGTGTGTTTATGATTTTTACAGCTGCTGCAGATGATGAATTGGAATCTATTGTTGAAAGTGCATTTGAAAATGTTGAACAGGgtaagaacatgccatttttcttctttcttatgtgtttttacttattctcaatgttttcttctttttgtcatttctgatacatttaacacgaagtatatttgcag

Basic information

species Vitis vinifera
transcript Vv11s0016g00170.t01
intron # 24
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g00170.t01 (Vitis vinifera), 5'ss of exon 24
lower sequence: LOC_Os07g37750.1 (Oryza sativa), 5'ss of exon 21
ATAAAATCTGGATGGCGTAGTGTGTTTATGATTTTTACAGCTGCTGCAGATGATGAATTGGAATCTATTGTTGAAAGTGCATTTGAAAATGTTGAACAGGgtaagaacatgccatttttcttctt----tcttatgtgttt-ttacttattctcaa--tgttttcttc--tttttgtcatttctgatacatttaacacgaagtatatttgcag
||||| || || |||||| ||||||| ||||| || || || || || ||||||||    |||  ||||||||||||||| ||||||||||| ||||| ||||||   |    | | |  ||  |    |   | |||||| ||||||  ||  ||  ||||   |||  || |  |||||  |  |  ||| ||   || || | || ||||
ATAAAGTCAGGTTGGCGTTGTGTGTTCATGATATTCACCGCGGCAGCTGATGATGAGAATGAACATATTGTTGAAAGTGCTTTTGAAAATGTAGAACAAGgtaagtttaaaggaatataattgctagcattagaagtgtttcttactttctccaaaaatgttagattccattatcatcattgttttttgattaaatg-gatgtgt-ttggcag

upper sequence: Vv11s0016g00170.t01 (Vitis vinifera), 5'ss of exon 24
lower sequence: GLYMA13G17610.1 (Glycine max), 5'ss of exon 24
ATAAAATCTGGATGGCGTAGTGTGTTTATGATTTTTACAGCTGCTGCAGATGATGAATTGGAATCTATTGTTGAAAGTGCATTTGAAAATGTTGAACAGGgtaagaacatgccatttttcttctttcttatgtgtttttacttattctcaatgttttcttctttttgtcatttctgatacatttaacacgaagtatatttgcag
||||| ||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||| || |||||||||||||||||||| ||||||||||| |    |||||  || | | |   || ||| |  ||    || | || | ||  |      ||||| || |  || ||||||   |    ||| |||
ATAAAGTCTGGGTGGCGTAGTGTATTTATGATTTTTACAGCTTCTGCAGATGATGAATTGGAATCAATTGTCGAGAGTGCATTTGAAAATGTTGAGCAGGgtaagaata----attttctttgtcttt---gtctttgttattgcagtctaagtctactattg-----catttgtggtgtatctaacacatggacattttacag

upper sequence: Vv11s0016g00170.t01 (Vitis vinifera), 5'ss of exon 24
lower sequence: GLYMA17G04890.1 (Glycine max), 5'ss of exon 24
ATAAAATCTGGATGGCGTAGTGTGTTTATGATTTTTACAGCTGCTGCAGATGATGAATTGGAATCTATTGTTGAAAGTGCATTTGAAAATGTTGAACAGGgtaagaacatgccatttttcttctttcttatgtgtttttacttattctcaatgttttcttctttttgtcatttctgatacatttaacacgaagtatatttgcag
||||| ||||| ||||||||||| |||||||||||||||||| |||||||||||||| ||||||| |||||||| |||||||||||||||||||| ||||||||||| |    |||||  || | |     ||||  || |  | ||| | | |     |  | ||| ||||| || |  || |||| |   |    ||| |||
ATAAAGTCTGGGTGGCGTAGTGTATTTATGATTTTTACAGCTTCTGCAGATGATGAAATGGAATCAATTGTTGATAGTGCATTTGAAAATGTTGAGCAGGgtaagaata----attttctttgtct-----gtgtcattgc--agtctaagtctaagtctactattg-catttgtggtgtatctaacgcatggacattttacag

upper sequence: Vv11s0016g00170.t01 (Vitis vinifera), 5'ss of exon 24
lower sequence: AT3G43300.1 (Arabidopsis thaliana), 5'ss of exon 23
ATAAAATCTGGATGGCGTAGTGTGTTTATGATTTTTACAGCTGCTGCAGATGATGAATTGGAATCTATTGTTGAAAGTGCATTTGAAAATGTTGAACAGGgtaagaacatgccatttttcttctttcttatgtgtttttacttattctcaatgttttcttctttttgtcatttctgatac--atttaacacgaagtatatttgcag
|| ||||| |||||| | ||||| |||||||| |||||||| ||||||||||| ||| | ||||| || |||||||   ||||||| |||||||| || ||| | ||   | |  |     | || |   ||| |   |  || | |||||| || ||    ||| ||  |     ||     | ||||     || | |||||||
ATCAAATCGGGATGGAGGAGTGTTTTTATGATATTTACAGCAGCTGCAGATGACGAAGTTGAATCGATAGTTGAAAAATCATTTGAGAATGTTGAGCAAGgtgacaaacagtccatcaaactattgcacttgtatccctgttt-tactcaattttctcactctttcgttttgataaatgtttgtgtaaccactcgtttgtttgcag