Sequence
atgc intronic sequence ATGC exonic sequenceTCCTTTCAACGAGCACAATGATGCTGACCTCTGGGAGGCTTTAGAGAGGGCACATTTGAAGGATGTTATCAGGAGGAATTCTCTTGGTCTTGATGCTGAGgtacatgctcaaatttgctttagtagatcattattttttttctcactctctttttctttttctctttttcaaacagcatggatattaaattgtcaattga...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0003g04390.t01 (Vitis vinifera), 5'ss of exon 24
lower sequence: LOC_Os04g52900.1 (Oryza sativa), 5'ss of exon 24
TCCTTTCAACGAGCACAATGATGCTGACCTCTGGGAGGCTTTAGAGAGGGCACATTTGAAGGATGTTATCAGGAGGAATTCTCTTGGTCTTGATGCTGAGgtacatgctcaaatttgctttagtagatcattattttttttctcactctctttttctttttctctttttcaaacagcatg--gatattaaattgtcaattga
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TCCTTTTAATGAGCACAATGATGCGGATCTCTGGGAAGCGCTTGAAAGGGCTCATCTAAAAGATGTCATAAGGAGGAATGCTCTGGGACTAGATGCTGAGgtacgtagtttgtttatcctttatttagttcagaccattatttcactttttttaagatgatgtatgcctgtatagacttgtcagtttttttttgtcagtc--
upper sequence: Vv10s0003g04390.t01 (Vitis vinifera), 5'ss of exon 24
lower sequence: GRMZM2G084181_T01 (Zea mays), 5'ss of exon 24
TCCTTTCAACGAGCACAATGATGCTGACCTCTGGGAGGCTTTAGAGAGGGCACATTTGAAGGATGTTATCAGGAGGAATTCTCTTGGTCTTGATGCTGAGgtacatgctcaaatttgctttagtagatcattattttttttctcactctctttttctttttctctttttcaaacagcatggatattaaattgtcaattga
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TCCCTTTAATGAGCACAATGATGCGGACCTCTGGGAGGCTCTGGAAAGGGCTCATCTAAAAGATGTTATAAGGAGGAATTCTTTAGGATTGGATGCTGAGgtatgcaattttcatgattttattcatggaagtttacgactattgattctcggctgtcattttattttacaaatgacacacacacaagtattccactttt
upper sequence: Vv10s0003g04390.t01 (Vitis vinifera), 5'ss of exon 24
lower sequence: GLYMA15G09900.1 (Glycine max), 5'ss of exon 24
TCCTTTCAACGAGCACAATGATGCTGACCTCTGGGAGGCTTTAGAGAGGGCACATTTGAAGGATGTTATCAGGAGGAATTCTCTTGGTCTTGATGCTGAGgtacatgctcaaatt--tgctttagtagatcattattttttttctcactctctttttc--tttttctctttttcaaacagcatggatattaaattgtcaattga
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TCCATTCAATGAACACAATGATGCTGACCTCTGGGAGGCTCTGGAGAGGGCACATTTGAAGGATGTGATACGGAGGAATTCTTTGGGGCTGGATGCTGAGgtaaatgctaatataggtgttttgatggag-atgattgtattaatgagtattggttaaaatgagcattatttactgacattcttctagttgaatt--tgatca-
upper sequence: Vv10s0003g04390.t01 (Vitis vinifera), 5'ss of exon 24
lower sequence: GLYMA13G29180.1 (Glycine max), 5'ss of exon 24
TCCTTTCAACGAGCACAATGATGCTGACCTCTGGGAGGCTTTAGAGAGGGCACATTTGAAGGATGTTATCAGGAGGAATTCTCTTGGTCTTGATGCTGAGgtacatgctcaaatttgctttagtagatcatta---ttttttttctcactctctttttctttttctctttttcaaacagcatggat--attaaattgtcaattga
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TCCATTTAATGAACACAATGATGCTGACCTCTGGGAGGCTCTGGAGAGGGCACATTTGAAGGATGTGATACGGAGGAATTCTCTGGGGCTGGACGCTGAGgtaaatgctaatagtaaca--agtagattttaaaaatatagcttctcatcccccgagtctttcttgggttatgttatttctttaattaattttggtgtcata---
upper sequence: Vv10s0003g04390.t01 (Vitis vinifera), 5'ss of exon 24
lower sequence: AT2G34660.2 (Arabidopsis thaliana), 5'ss of exon 24
TCCTTTCAACGAGCACAATGATGCTGACCTCTGGGAGGCTTTAGAGAGGGCACATTTGAAGGATGTTATCAGGAGGAATTCTCTTGGTCTTGATGCTGAGgtacatgctcaaatttgctttagtagatcattattttttttctcactctctttttctttttctct-ttttcaaacagcatggatattaaattgtcaattga
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TCCATTTGGTGAACACAATGATGCTGATCTTTGGGAATCTCTAGAGAGGGCACACTTGAAGGATACCATCCGCAGAAATCCTCTTGGTCTTGATGCTGAGgtattcagttg--ctgcctatattgatatgaagtctcatttttaagtggtaataactgattttcaatctttgttcag------------------------
upper sequence: Vv10s0003g04390.t01 (Vitis vinifera), 5'ss of exon 24
lower sequence: AT1G30400.1 (Arabidopsis thaliana), 5'ss of exon 25
TCCTTTCAACGAGCACAATGATGCTGACCTCTGGGAGGCTTTAGAGAGGGCACATTTGAAGGATGTTATCAGGAGGAATTCTCTTGGTCTTGATGCTGAGgtacatgctcaaatttgctttagtagatcattattttttttctcactctctttttctttttctctttttcaaacagcatggatattaaattgtcaattga
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CCCATTTAGTGAACACAACGACGCCGATCTCTGGGAATCTCTTGAGAGGGCACACTTGAAAGATACTATCCGCAGAAATCCTCTTGGTCTTGATGCTGAGgtacttaattaaatat-ttccatttgggaaagtctcatgtattcagtaataataactcagtctttttggtcag---------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122689215|gb|EC935332.1|EC935332EST: CACATTTGAAGGATGTTATCAGGAGGAATTCTCTTGGTCTTGATGCTGAG GTTTCCGAGGCCGGAGAGAATTTCAGTGTTGGACAGAGGCAACTTTTAAGT
genomic: CACATTTGAAGGATGTTATCAGGAGGAATTCTCTTGGTCTTGATGCTGAGgtacatgctc ... gtatgtgaagGTTTCCGAGGCCGGAGAGAATTTCAGTGTTGGACAGAGGCAACTTTTAAGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCCTTTCAACGAGCACAATGATGCTGACCTCTGGGAGGCTTTAGAGAGGGCACATTTGAAGGATGTTATCAGGAGGAATTCTCTTGGTCTTGATGCTGAGgtacatgctcaaatttgctttagtagatcattattttttttctcactctctttttctttttctctttttcaaacagcatggatattaaattgtcaattga
- - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cactctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacagca