Sequence
atgc intronic sequence ATGC exonic sequenceTCTTTACCACGGATAAGAAATCAGAATTTTCTGTCTTGGTTGATCGTGCCACTGGAGGATCTAGCATCAAAGATGGACAAGTAGAGCTAATGCTTCATAGgttcaattctcacattattttattgtctaacatttagatgtttttcgtacttctgttattacagacatggacacatgttaaactgaaatttcttctttttgtatgaag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0023g03650.t01 (Vitis vinifera), 5'ss of exon 24
lower sequence: GLYMA01G36980.1 (Glycine max), 5'ss of exon 23
TCTTTACCACGGATAAGAAATCAGAATTTTCTGTCTTGGTTGATCGTGCCACTGGAGGATCTAGCATCAAAGATGGACAAGTAGAGCTAATGCTTCATAGgttcaattctca----cattattttattgtctaacatttaga-tgtt--tttcgtacttctgttattacagacatggacacatgttaaactgaaatttcttctttttgtatgaag
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TTTATGTTAAGGATAAGAAATCTGAATTGTCGGTCTTAGTTGATCGGGCCACTGGAGGAGGCAGTATCAAAGATGGTCAGGTGGAACTTATGCTTCATAGgtacaaatttaaactgcatgatatttttatattgcatacaaactactaattgctgatttttactactccag--------------------------------------------
upper sequence: Vv04s0023g03650.t01 (Vitis vinifera), 5'ss of exon 24
lower sequence: GLYMA02G05240.1 (Glycine max), 5'ss of exon 23
TCTTTACCACGGATAAGAAATCAGAATTTTCTGTCTTGGTTGATCGTGCCACTGGAGGATCTAGCATCAAAGATGGACAAGTAGAGCTAATGCTTCATAGgttcaattctcacattattttattgtctaacatttagatgtttttcgtacttctgttattacagacatggacacatgttaaactgaaatttcttctttttgtatgaag
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TTTATACTAAGGATAAGAAATCTGAGTTCTCAGTCTTAGTTGATCGTGCCACTGGTGGAGCCAGCATCAAAGATGGTGAGGTGGAATTGATGCTTCATAGgtat-----tcaagctgtctttttat-tgctatttcaatact------actatt-ttattgcaaacaaag-----tattaacacaatgtttactactcaag-------
upper sequence: Vv04s0023g03650.t01 (Vitis vinifera), 5'ss of exon 24
lower sequence: GLYMA16G23600.1 (Glycine max), 5'ss of exon 24
TCTTTACCACGGATAAGAAATCAGAATTTTCTGTCTTGGTTGATCGTGCCACTGGAGGATCTAGCATCAAAGATGGACAAGTAGAGCTAATGCTTCATAGgttcaattctcacattattttattgtctaacatttagatgtttttcgtacttctgttattacagacatggacacatgttaaactgaaatttcttctttttgtatgaag
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TTTATACTAAGGATGAAAAATCTGAGTTCTCAGTGTTAGTTGATCGTGCCACTGGTGGAGCCAGCATCAAAGATGGTGAGGTGGAATTGATGCTTCACAGgt---attcaagctttcttttattaa-tgctaattcaatattatt----------ttattgcaaacaaag-----tattaacacaatgtttactactcaag-------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|351019748|gb|FQ439565.1|FQ439565EST: ACTGGAGGATCTAGCATCAAAGATGGACAAGTAGAGCTAATGCTTCATAG GCGTATGATCTTTGACGACGGTAGAGGAGTGGGTGAAGCTCTTGATGAGAC
genomic: ACTGGAGGATCTAGCATCAAAGATGGACAAGTAGAGCTAATGCTTCATAGgttcaattct ... ttgtatgaagGCGTATGATCTTTGATGACAGTAGAGGAGTGGGTGAAGCTCTTGATGAGAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCTTTACCACGGATAAGAAATCAGAATTTTCTGTCTTGGTTGATCGTGCCACTGGAGGATCTAGCATCAAAGATGGACAAGTAGAGCTAATGCTTCATAGgttcaattctcacattattttattgtctaacatttagatgtttttcgtacttctgttattacagacatggacacatgttaaactgaaatttcttctttttgtatgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT