Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   		27  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTTTGGAGAGGGCGAGAAGTATGTGAAGGCCGTTTTCTCACTTGCCAGTAAAATTGCTCCTAGTGTTGTATTTGTGGATGAAgtgagcttcatataactctttttgtttatatattgtttgcttcctctctgcttgctatattctttgtttggtcttag

Basic information

species Vitis vinifera
transcript Vv17s0000g01550.t01
intron # 23
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g01550.t01 (Vitis vinifera), 5'ss of exon 23
lower sequence: LOC_Os07g47530.2 (Oryza sativa), 5'ss of exon 23
TGGTTTGGAGAGGGCGAGAAGTATGTGAAGGCCGTTTTCTCACTTGCCAGTAAAATTGCTCCTAGTGTTGTATTTGTGGATGAAgtgagc--------ttcatataactctttttgtttatat-attgtttgcttcctctctgcttgctatattctttgtttggtcttag--------------
|||||||| ||||| ||||| ||||| || || || || |||||||| || |||||||||||||||||  | ||||||||||| || ||         ||| |||     ||||| ||   || | |  | | ||   |     ||  |||   |  |||||    || |              
TGGTTTGGCGAGGGTGAGAAATATGTCAAAGCTGTGTTTTCACTTGCAAGCAAAATTGCTCCTAGTGTCATTTTTGTGGATGAGgtcagtcaacaaaattcttatggtcattttttttggaatgaattgtcgtttggcccaccttttatattaccaatgtttcagtttggaccaccatatacct

upper sequence: Vv17s0000g01550.t01 (Vitis vinifera), 5'ss of exon 23
lower sequence: GRMZM2G157621_T02 (Zea mays), 5'ss of exon 22
TGGTTTGGAGAGGGCGAGAAGTATGTGAAGGCCGTTTTCTCACTTGCCAGTAAAATTGCTCCTAGTGTTGTATTTGTGGATGAAgtgagc--ttcatataactctttttgtttatatattgtttgcttcctctctgcttgctatattctttgtttg-gtcttag-------
|||||||||||||| || || |||||||| || ||||| |||||||| || |||||| ||||||||||| | || |||||||| || ||   ||    ||||  |   || | ||||     |  | |  |   |  | |||   |  ||  |||| ||| |         
TGGTTTGGAGAGGGAGAAAAATATGTGAAAGCTGTTTTTTCACTTGCAAGCAAAATTTCTCCTAGTGTTATTTTCGTGGATGAGgttagtgattttcttaacggtcactgatgatatgcctatgacataataagttgtagcttactcattgatttgtgtcctgtatattag

upper sequence: Vv17s0000g01550.t01 (Vitis vinifera), 5'ss of exon 23
lower sequence: GRMZM2G354532_T01 (Zea mays), 5'ss of exon 2
---------TGGTTTGGAGAGGGCGAGAAGTATGTGAAGGCCGTTTTCTCACTTGCCAGTAAAATTGCTCCTAGTGTTGTATTTGTGGATGAAgtgagctt-catataactctttttgtttatatattgtttgcttcctctctgcttgctatattctttgtttggtcttag
         |||||||| || || ||||||||||| ||||| ||||||||||| || |||||||| || || |||||| ||||| | ||||| ||  ||   || | || | |  ||   ||   | |    ||    | | | |   ||   || ||||  |      ||
GCTAACCAGTGGTTTGGTGAAGGGGAGAAGTATGTAAAGGCTGTTTTCTCACTAGCAAGTAAAATAGCACCCAGTGTTATATTTATTGATGAGgtatgcaagcacacaagtttactttagtaaccactaccggcacagtatataccaacttctttttttgactttctggag

upper sequence: Vv17s0000g01550.t01 (Vitis vinifera), 5'ss of exon 23
lower sequence: GRMZM2G126453_T02 (Zea mays), 5'ss of exon 8
TGGTTTGGAGAGGGCGAGAAGTATGTGAAGGCCGTTTTCTCACTTGCCAGTAAAATTGCTCCTAGTGTTGTATTTGTGGATGAAgtgagctt-catataactctttttgtttatatattgtttgcttcctctctgcttgctatattctttgtttggtcttag
|||||||| || || ||||||||||| ||||| ||||||||||| || |||||||| || || |||||| ||||| | ||||| ||  ||   || | || | |  ||   ||   | |    ||    | | | |   || | || ||||  |      ||
TGGTTTGGTGAAGGGGAGAAGTATGTAAAGGCTGTTTTCTCACTAGCAAGTAAAATAGCACCCAGTGTTATATTTATTGATGAGgtatgcaagcacacaagtttactttagtaaccactaccggcacagtatataccaacttt-ttttttgactttctgcag

upper sequence: Vv17s0000g01550.t01 (Vitis vinifera), 5'ss of exon 23
lower sequence: GRMZM2G052403_T01 (Zea mays), 5'ss of exon 14
TGGTTTGGAGAGGGCGAGAAGTATGTGAAGGCCGTTTTCTCACTTGCCAGTAAAATTGCTCCTAGTGTTGTATTTGTGGATGAAgtgagctt-catataactctttttgtttatatattgtttgcttcctctctgcttgctatattctttgtttggtcttag
|||||||| || || ||||||||||| ||||| ||||||||||| || |||||||| || || |||||| ||||| | ||||| ||  ||   || | |  |    ||  | | | | |||| |     | |   |   || |   |||||  |      ||
TGGTTTGGTGAAGGGGAGAAGTATGTAAAGGCTGTTTTCTCACTAGCAAGTAAAATAGCCCCCAGTGTTATATTTATCGATGAGgtatgcaagcagacaggttacattagtaa-acactgttggtacagtgtacaccaactgt---ctttgactttctgcag

upper sequence: Vv17s0000g01550.t01 (Vitis vinifera), 5'ss of exon 23
lower sequence: GRMZM2G435582_T01 (Zea mays), 5'ss of exon 3
TGGTTTGGAGAGGGCGAGAAGTATGTGAAGGCCGTTTTCTCACTTGCCAGTAAAATTGCTCCTAGTGTTGTATTTGTGGATGAAgtgagctt-catataactctttttgtttatatattgtttgcttcctctctgcttgctatattctttgtttggtcttag---
|||||||| || || ||||||||||| ||||  ||||||||||| || |||||||| || || |||||| ||||| | ||||| ||  ||   || | || | |  ||   ||   | |    ||    | | | |   || | || ||| ||   | |  |   
TGGTTTGGTGAAGGGGAGAAGTATGTAAAGGTTGTTTTCTCACTAGCAAGTAAAATAGCACCCAGTGTTATATTTATTGATGAGgtatgcaagcacacaagtttactttagtaatcactaccggcacagtatataccaact-tctttttttttgactttctgcag

upper sequence: Vv17s0000g01550.t01 (Vitis vinifera), 5'ss of exon 23
lower sequence: GLYMA04G37050.1 (Glycine max), 5'ss of exon 6
TGGTTTGGAGAGGGCGAGAAGTATGTGAAGGCCGTTTTCTCACTTGCCAGTAAAATTGCTCCTAGTGTTGTATTTGTGGATGAAgtgagc--ttcatataactctttttg-tttatata---ttgtttgcttcctc-tctgcttgctatattctttgtttggtcttag----
|||||||| ||||| || |||||||| || || ||||| || || || ||||||||||||||||| ||  ||||||| || ||||| |||  ||   | || | |||||  ||| |||    |  | |||| |    |      | || |   | | |    ||||      
TGGTTTGGTGAGGGTGAAAAGTATGTCAAAGCTGTTTTTTCCCTGGCTAGTAAAATTGCTCCTAGCGTGATATTTGTTGACGAAgtaagccttttgcacaaatgtttttaatttgtatcaattcatctgctgcaaaataaatcagttaaaacttgtatggcttcttgtatag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37186767|gb|CF606120.1|CF606120
EST:     TTTTCTCACTTGCCAGTAAAATTGCTCCTAGTGTTGTATTTGTGGATGAA                         GTTGATAGCATGCTGGGCCGGAGGGAGAATCCAGGGGAACATGAGGCCATG
genomic: TTTTCTCACTTGCCAGTAAAATTGCTCCTAGTGTTGTATTTGTGGATGAAgtgagcttca ... ttggtcttagGTTGATAGCATGCTGGGCCGGAGGGAGAATCCAGGGGAACATGAGGCCATG
EST: gi|110720420|gb|EE096327.1|EE096327
EST:     TTTTCTCACTTGCCAGTAAAATTGCTCCTAGTGTTGTATTTGTGGATGAA                         GTTGATAGCATGCTGGGCCGGAAGGAGAATCCAGGGGAACATGAGGCCATG
genomic: TTTTCTCACTTGCCAGTAAAATTGCTCCTAGTGTTGTATTTGTGGATGAAgtgagcttca ... ttggtcttagGTTGATAGCATGCTGGGCCGGAGGGAGAATCCAGGGGAACATGAGGCCATG