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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACTCGAGTACAGTTTCACTCTGATCAAATCCGGTTGCTGGTATTCCATGAAACACAGTTGGCAACATATGATGCCTCAAAAATGGAGCGGATTCGTCAGgtagaaagtttagtcagtgactcagcttacttcaatgtttgacatcagaatttttgtaataagtttcttatgtgtacttgcag

Basic information

species Vitis vinifera
transcript Vv14s0060g01680.t01
intron # 23
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0060g01680.t01 (Vitis vinifera), 5'ss of exon 23
lower sequence: GLYMA19G41840.1 (Glycine max), 5'ss of exon 23
CACTCGAGTACAGTTTCACTCTGATCAAATCCGGTTGCTGGTATTCCATGAAACACAGTTGGCAACATATGATGCCTCAAAAATGGAGCGGATTCGTCAGgtagaaagtttagtcagtgactcagcttacttcaatgt-ttgacatcagaatttttgtaataagt---ttcttatgtgt--acttgcag---
|||||| || ||||| || |  || ||||||||||| ||||||  |||||| || |||||||||| |||||||||||| || ||||| || ||| | ||||||  | | ||    |   | |     || | |    | |||   ||| || | ||  |||       | |||||   |  | |||  |   
CACTCGTGTGCAGTTCCATTTAGACCAAATCCGGTTACTGGTAGCCCATGAGACTCAGTTGGCAATATATGATGCCTCTAAGATGGATCGCATTAGGCAGgtaagaggattttctatctagtattggtattgctgcttgttgctgtcaaaaatattaaaatggagacatccttataaattaatttgttgcag

upper sequence: Vv14s0060g01680.t01 (Vitis vinifera), 5'ss of exon 23
lower sequence: GLYMA20G38230.1 (Glycine max), 5'ss of exon 24
CACTCGAGTACAGTTTCACTCTGATCAAATCCGGTTGCTGGTATTCCATGAAACACAGTTGGCAACATATGATGCCTCAAAAATGGAGCGGATTCGTCAGgtagaaagtttagtcagtgactcagcttacttcaatgtttgacatcagaatttt---tgtaataagtttcttatgtgtacttgcag---
 || ||||||||||| || ||||||||| | || ||  ||||| | ||||| || || ||||||| |||||||||||| || ||||| || ||||| ||||||  ||||||  || |  | | |  | |      || |||    || |||||    || |||| | | | ||  |    |||| |   
TACACGAGTACAGTTCCATTCTGATCAACTTCGCTTATTGGTAGTTCATGAGACTCAATTGGCAATATATGATGCCTCTAAGATGGAACGCATTCGGCAGgtatgaagtttcttccgatattga--taaagctggtggttgctgacaaaatttaaaatgaaatatgct-cataaattcctttgctgcag

upper sequence: Vv14s0060g01680.t01 (Vitis vinifera), 5'ss of exon 23
lower sequence: GLYMA03G39290.1 (Glycine max), 5'ss of exon 24
CACTCGAGTACAGTTTCACTCTGATCAAATCCGGTTGCTGGTATTCCATGAAACACAGTTGGCAACATATGATGCCTCAAAAATGGAGCGGATTCGTCAGgtagaaagtttagtcagt---gactcagcttacttcaatgtttgacatcagaatttttgtaataagtttcttatgtgt--acttgcag---
|||||| || ||||| || |  || ||||||||||| |||||   |||||| || |||||||||| |||||||||||| || ||||| || ||| | ||||||  | | ||  ||  |   |  |  |  |  ||   ||||       | ||||    |    |  | |||||   |  |||||| |   
CACTCGTGTGCAGTTCCATTTAGACCAAATCCGGTTACTGGTGGCCCATGAGACTCAGTTGGCAATATATGATGCCTCTAAGATGGATCGCATTAGGCAGgtaagaggatttttctatctagtattggtattattgcttgttgctgtcaaaaattaaaattgagacatccttataaatcaacttgctgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110383318|gb|EC947684.1|EC947684
EST:     CAGTTGGCAACATATGATGCCTCAAAAATGGAGCGGATTCGTCAG                         TGGATCCCACAAGATGGACTATCTGCGCCCATATCTTATGCAGCTTACTCT
genomic: CAGTTGGCAACATATGATGCCTCAAAAATGGAGCGGATTCGTCAGgtagaaagtt ... gtacttgcagTGGATCCCACAAGATGGACTATCTGCGCCCATATCTTATGCAGCTTACTCT