Sequence
atgc intronic sequence ATGC exonic sequenceGGAAGAATCTTGATTGATGATTGTGACATTTCAAAGTTTGGACTGAGGGATCTACGTAAAGTTCTTGGTATTATACCACAATCACCAGTTCTTTTCTCAGgtatactacatctataatcttggttgtgatcaggctaacagctaggcatatttgatctactctccattgttttccttgatttgcttgatgtggttttccc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0003g04390.t01 (Vitis vinifera), 5'ss of exon 23
lower sequence: GRMZM2G084181_T01 (Zea mays), 5'ss of exon 23
GGAAGAATCTTGATTGATGATTGTGACATTTCAAAGTTTGGACTGAGGGATCTACGTAAAGTTCTTGGTATTATACCACAATCACCAGTTCTTTTCTCAGgtatactacatctataatcttggttgtgatcaggctaacagctaggcatatttgatctactctccattgttttccttgatttgcttgatgtggttttccc--
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GGGAGAATATTAATTGATGATTGTGACACTTCTAAGTTTGGAATTTGGGACTTGCGCAAAGTTCTAGGAATAATACCACAGGCACCAGTTCTATTCTCAGgtatgcta-gtgaaaaata-----------catgttagctgctggagcttctttttttggcaac--ttgggtttagtgaaatatttattaatgccctttcag
upper sequence: Vv10s0003g04390.t01 (Vitis vinifera), 5'ss of exon 23
lower sequence: GLYMA15G09900.1 (Glycine max), 5'ss of exon 23
GGAAGAATCTTGATTGATGATTGTGACATTTCAAAGTTTGGACTGAGGGATCTACGTAAAGTTCTTGGTATTATACCACAATCACCAGTTCTTTTCTCAGgtatactacatctataatcttggttgtgatcaggctaacagctaggcatatttgatctactctccattgttt-tccttgatttgcttgatgtggttttccc-------
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GGAAGAATATTAATTGATGATTATGATGTTGCAAAGTTTGGGCTTGCTGATTTGCGTAAAGTTCTTGGCATTATACCACAATCTCCTGTTCTCTTTTCAGgtattt---atttatgatataattttc--tgaaattatattgtag---tgtttgataccattgccagggtttgtttctgaattatccaataaccaaagagaataaaaa
upper sequence: Vv10s0003g04390.t01 (Vitis vinifera), 5'ss of exon 23
lower sequence: GLYMA13G29180.1 (Glycine max), 5'ss of exon 23
GGAAGAATCTTGATTGATGATTGTGACATTTCAAAGTTTGGACTGAGGGATCTACGTAAAGTTCTTGGTATTATACCACAATCACCAGTTCTTTTCTCAGgtatactacatctataatcttggttgtgatcaggcta-acagctaggcatatttgatctactctccattgttttccttgatttgcttgatgtggttttccc-------
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GGAAGAATATTAATTGATGATTATGATGTTGCAAAGTTTGGGCTTGCTGATTTGCGTAAAGTTCTTGGCATTATACCACAATCTCCTGTTCTCTTTTCAGgtat-ttatga-tataatttt--ctgaaattatattgtagtgtttggttttgtttcagggttatccaataa----ccaaagacaaaaaaaaaagttttcaattaggaa
upper sequence: Vv10s0003g04390.t01 (Vitis vinifera), 5'ss of exon 23
lower sequence: AT1G30400.1 (Arabidopsis thaliana), 5'ss of exon 24
GGAAGAATCTTGATTGATGATTGTGACATTTCAAAGTTTGGACTGAGGGATCTACGTAAAGTTCTTGGTATTATACCACAATCACCAGTTCTTTTCTCAGgtatac--tacatctataatcttggttgtgatcaggctaacagctaggcatatttgatctactctccattgttttccttgatttgcttgatgtggttttccc----
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GGAAGGATTTTAATTGATGAATGCGACATTGGAAGATTTGGACTGATGGACCTACGTAAAGTGCTCGGAATTATACCGCAAGCGCCAGTTCTTTTCTCAGgtatgtcttgcatttcttctggtgcttatatttattttc-ctgcttctggtatttatctttcttaaagtcaaaataatgtatactatgccaataacttatattaagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122689215|gb|EC935332.1|EC935332EST: TCTACGTAAAGTTCTTGGTATTATACCACAATCACCAGTTCTTTTCTCAG GAACTGTGCGATTCAATCTTGATCCTTTCAACGAGCACAATGATGCTGACC
genomic: TCTACGTAAAGTTCTTGGTATTATACCACAATCACCAGTTCTTTTCTCAGgtatactaca ... tttcacatagGAACTGTGCGATTCAATCTTGATCCTTTCAACGAGCACAATGATGCTGACC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGAAGAATCTTGATTGATGATTGTGACATTTCAAAGTTTGGACTGAGGGATCTACGTAAAGTTCTTGGTATTATACCACAATCACCAGTTCTTTTCTCAGgtatactacatctataatcttggttgtgatcaggctaacagctaggcatatttgatctactctccattgttttccttgatttgcttgatgtggttttccc
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