Sequence
atgc intronic sequence ATGC exonic sequenceGGGATCAGTTGAAACTTCTATATCATCCCACTTTGGTGGAATGAACTATCCATCTTTGTTCAGTTCACGACCGTCTGGCTATGGGACTTCACAATCCTCAgtatgtaactaattcaacgaggttattttaatgtctgttattttctaagtgtgggtattgattgacctggtttctagttaagaatatgaaaaacattgaa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0031g02090.t01 (Vitis vinifera), 5'ss of exon 23
lower sequence: LOC_Os03g15900.2 (Oryza sativa), 5'ss of exon 20
GGGATCAGTTGAAACTTCTATATCATCCCACTTTGGTGGAATGAACTATCCATCTTTGTTCAGTTCACGACCGTCTGGCTATGGGACTTCACAATCCTCAgtatgtaactaattcaacgaggttattttaatgtctgttattttctaagtgtgggtattgattgacctggtttctagttaagaatatgaaaaacattgaa--
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TGGTTCTGTAGAAACATCCATATCGTCCCATTTTAGTGGCATGAACTATCCGTCGTTGTTCAGTTCAAAACCATCAGGATATGGGGCTTCACAACAAACGgtattcttttacttagtctttttagtgttaaagtgatctccattattgggtttcacacttaataact--gttggaaaataacgtactgaaaacctatgaaat
upper sequence: Vv07s0031g02090.t01 (Vitis vinifera), 5'ss of exon 23
lower sequence: GRMZM2G012319_T01 (Zea mays), 5'ss of exon 22
GGGATCAGTTGAAACTTCTATATCATCCCACTTTGGTGGAATGAACTATCCATCTTTGTTCAGTTCACGACCGTCTGGCTATGGGACTTCACAATCCTCAgtatgtaactaattcaacgaggttattttaatgtctgttattttctaagtgtgggtattgattgacctggtttctagttaagaatatgaaaaacattgaa-------------------------------------------------------------------------------------
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TGGTTCTGTTGAAACCTCCATATCGTCCCATTTTGGAGGCATGAACTATCCATCACTGTTCAGTTCAAAACCGTCAAGTCATGGGGCCTCACAACAAACGgtatatt-ctactgcatctatgctatgttcatttct-ttggtgccgagaggagggtgt--gctaaaaaaacatttacttaacattgttatctgagtttagacaaagcagatactgtaccatacaattttaaaccattttacagaatggatggatatggtttctgataggtttgcctttgcttcag
upper sequence: Vv07s0031g02090.t01 (Vitis vinifera), 5'ss of exon 23
lower sequence: GLYMA08G03020.1 (Glycine max), 5'ss of exon 22
------------------GGGATCAGTTGAAACTTCTATATCATCCCACTTTGGTGGAATGAACTATCCATCTTTGTTCAGTTCACGACCGTCTGGCTATGGGACTTCACAATCCTCAgtatgtaactaattcaacgaggttattttaatgtctgttattttctaagtgtg--ggtattgattgacctggtttctagttaagaatatgaaaaacattgaa
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ATCATCTCCAGATTCAACAGGATCAGTTGAAACTTCGATATCATCCCACTTTGGAGGAATGAGCTACCCTTCGCTGTTTAGTTCCCGACCA-CAAACTACGgtaccaaata-ttatgattaag-aatcaattta-------ttttgcaacatgcaccatgcttctaatttgatgctatttctgaacct--tttatatttgatattttacgca--------
upper sequence: Vv07s0031g02090.t01 (Vitis vinifera), 5'ss of exon 23
lower sequence: GLYMA05G36530.1 (Glycine max), 5'ss of exon 22
------------------GGGATCAGTTGAAACTTCTATATCATCCCACTTTGGTGGAATGAACTATCCATCTTTGTTCAGTTCACGACCGTCTGGCTATGGGACTTCACAATCCTCAgtatgtaactaattcaacgaggttattttaatgtctgttattttctaagtgtg--ggtattgattgacctggtttctagttaagaatatgaaaaacattgaa
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ATCATCTCCAGATTCAACAGGATCAGTTGAAACTTCGATATCATCCCACTTTGGAGGAATGAGCTACCCTTCGCTGTTTAGTTCCCGGCCA-CAAACTACGgtaccaaata-ttatgattaag-aatcaatttg-------ttttgcaacatgtaccacacttctaatttgatgctatttctgaacct--tttatatttgatattttatgca--------
upper sequence: Vv07s0031g02090.t01 (Vitis vinifera), 5'ss of exon 23
lower sequence: AT2G07360.1 (Arabidopsis thaliana), 5'ss of exon 23
------------GGGATCAGTTGAAACTTCTATATCATCCCACTTTGGTGGAATGAACTATCCATCTTTGTTCAGTTCACGACCGTCTGGCTATGGGACTTCACAATCCTCAgtatgtaactaattcaacg----aggttattttaatgtctgttattttctaagtgtgggtat-tgattgacctggtttctagttaagaatatgaaaaacattgaa
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TCCAGATTCTGCTGGATCAGTGGAAAGCTCAATATCCTCTCACTTTGGTGGAATGAACTACCCATCATTGTTCAGTTCAAAGCCTTCCTCACAAGCAACGgtagggtacacacaattcagttaagaagaacttatgaattattttcgtgccagctaattt-taactatatgaatgtgggtaactca---tatag-----------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161714032|gb|FC064107.1|FC064107EST: CATCTTTGTTCAGTTCACGACCGTCTGGCTATGGGACTTCACAATCCTCA GAGAGGCCAGCAGCAAGCAGGTTTAGCAATTCATCCACGGGTGGTCCTTCC
genomic: CATCTTTGTTCAGTTCACGACCGTCTGGCTATGGGACTTCACAATCCTCAgtatgtaact ... tttgtaacagGAGAGGCCAGCAGCAAGCAGGTTTAGCAATTCATCCACGGGTGGTCCTTCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGGATCAGTTGAAACTTCTATATCATCCCACTTTGGTGGAATGAACTATCCATCTTTGTTCAGTTCACGACCGTCTGGCTATGGGACTTCACAATCCTCAgtatgtaactaattcaacgaggttattttaatgtctgttattttctaagtgtgggtattgattgacctggtttctagttaagaatatgaaaaacattgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaca