1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' |
ATGGCCTACGTACAAAGGATAAAGAACGTGTATTGGTACTTGCCGCCACCAATAGGCCTTTTGACCTTGATGAGGCTGTTATTAGGAGGCTACCCAGGAGgtaaacatcatatgattataatcccttgatttgttgtgtatgagtattagtcaacccagaaaaaccttaattccctactatgtatgttaactgccaacac...
species | Vitis vinifera |
transcript | Vv07s0005g00200.t01 |
intron # | 23 |
splice site | 5' |
intron type | U2 |
EST: AATAGGCCTTTTGACCTTGATGAGGCTGTTATTAGGAGGCTACCCAGGAG ATTGATGGTGAATTTGCCAGATGCTTTAAATAGAGAGAAAATTCTGAGAGTEST: gi|71854977|gb|DT004032.1|DT004032
genomic: AATAGGCCTTTTGACCTTGATGAGGCTGTTATTAGGAGGCTACCCAGGAGgtaaacatca ... tttcatgcagATTGATGGTGAATTTGCCAGATGCTTTAAATAGAGAGAAAATTCTGAGAGT
EST: AATAGGCCTTTTGACCTTGATGAGGCTGTTATTAGGAGGCTACCCAGGAG ATTGATGGTGAATTTGCCAGATGCTTTAAATAGAGAGAAAATTCTGAGAGTEST: gi|30300649|gb|CB977443.1|CB977443
genomic: AATAGGCCTTTTGACCTTGATGAGGCTGTTATTAGGAGGCTACCCAGGAGgtaaacatca ... tttcatgcagATTGATGGTGAATTTGCCAGATGCTTTAAATAGAGAGAAAATTCTGAGAGT
EST: AATAGGCCTTTTGACCTTGATGAGGCTGTTATTAGGAGGCTACCCAGGAG ATTGATGGTGAATTTGCCAGATGCTTTAAATAGAGAGAAAATTCTGAGAGTEST: gi|71881952|gb|DT031007.1|DT031007
genomic: AATAGGCCTTTTGACCTTGATGAGGCTGTTATTAGGAGGCTACCCAGGAGgtaaacatca ... tttcatgcagATTGATGGTGAATTTGCCAGATGCTTTAAATAGAGAGAAAATTCTGAGAGT
EST: AATAGGCCTTTTGACCTTGATGAGGCTGTTATTAGGAGGCTACCCAGGAG ATTGATGGTGAATTTGCCAGATGCTTTAAATAGAGAGAAAATTCTGAGAGTEST: gi|30300714|gb|CB977508.1|CB977508
genomic: AATAGGCCTTTTGACCTTGATGAGGCTGTTATTAGGAGGCTACCCAGGAGgtaaacatca ... tttcatgcagATTGATGGTGAATTTGCCAGATGCTTTAAATAGAGAGAAAATTCTGAGAGT
EST: AATAGGCCTTTTGACCTTGATGAGGCTGTTATTAGGAGGCTACCCAGGAG ATTGATGGTGAATTTGCCAGATGCTTTAAATAGAGAGAAAATTTTGAGAGTEST: gi|30134135|gb|CB919473.1|CB919473
genomic: AATAGGCCTTTTGACCTTGATGAGGCTGTTATTAGGAGGCTACCCAGGAGgtaaacatca ... tttcatgcagATTGATGGTGAATTTGCCAGATGCTTTAAATAGAGAGAAAATTCTGAGAGT
EST: AATAGGCCTTTTGACCTTGATGAGGCTGTTATTAGGAGGCTACCCAGGAG ATTGATGGTGAATTTGCCAGATGCTTTAAATAGAGAGAAAATTCTGAGAGTEST: gi|30130536|gb|CB915875.1|CB915875
genomic: AATAGGCCTTTTGACCTTGATGAGGCTGTTATTAGGAGGCTACCCAGGAGgtaaacatca ... tttcatgcagATTGATGGTGAATTTGCCAGATGCTTTAAATAGAGAGAAAATTCTGAGAGT
EST: AATAGGCCTTTTGACCTTGATGAGGCTGTTATTAGGAGGCTACCCAGGAG ATTGATGGTGAATTTGCCAGATGCTTTAAATAGAGAGAAAATTCTGAGAGTEST: gi|30125513|gb|CB910852.1|CB910852
genomic: AATAGGCCTTTTGACCTTGATGAGGCTGTTATTAGGAGGCTACCCAGGAGgtaaacatca ... tttcatgcagATTGATGGTGAATTTGCCAGATGCTTTAAATAGAGAGAAAATTCTGAGAGT
EST: AATAGGCCTTTTGACCTTGATGAGGCTGTTATTAGGAGGCTACCCAGGAG ATTGATGGTGAATTTGCCAGATGCTTTAAATAGAGAGAAAATTCTGAGAGT
genomic: AATAGGCCTTTTGACCTTGATGAGGCTGTTATTAGGAGGCTACCCAGGAGgtaaacatca ... tttcatgcagATTGATGGTGAATTTGCCAGATGCTTTAAATAGAGAGAAAATTCTGAGAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGGCCTACGTACAAAGGATAAAGAACGTGTATTGGTACTTGCCGCCACCAATAGGCCTTTTGACCTTGATGAGGCTGTTATTAGGAGGCTACCCAGGAGgtaaacatcatatgattataatcccttgatttgttgtgtatgagtattagtcaacccagaaaaaccttaattccctactatgtatgttaactgccaacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaaaaa