Sequence
atgc intronic sequence ATGC exonic sequenceAACACTTCTAAGCTGAAGGAAACTGTTTCAGTGGCGAATAATGCCTGTTGGGCAATTGGAGAATTAGCAGTTAAGgtatgttctccaattttttcttcagcaaaatcattccacatgatgtgcctttctgatttattgatctgtcttaaaagttgactggattttaacataagat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0038g02830.t01 (Vitis vinifera), 5'ss of exon 23
lower sequence: LOC_Os04g59494.1 (Oryza sativa), 5'ss of exon 23
AACACTTCTAAGCTGAAGGAAACTGTTTCAGTGGCGAATAATGCCTGTTGGGCAATTGGAGAATTAGCAGTTAAGgtat-gttctccaattttttcttcagcaaaatc-attccacatgatgtgcctttctgatttattgatctgtcttaaaagttgactggattttaacataagat-
||| | ||||||| |||| |||||||| || || ||||||||||||||||||||||||||| | ||||| | || | | || | || | ||| || | ||| | | | | |||||| | || | ||| || |||| | | |
AACCCGCAATGTGTGAAGGAGGCTGTGTCAGTGGCTAACAACGCCTGTTGGGCAATTGGAGAATTAGCAATCAAGgttttgtaccacttttgcaaccctagttttttttatttcaaaagatattgcaaccctag--attgataca-catagatgtttcctttcttttctgagcaacta
upper sequence: Vv03s0038g02830.t01 (Vitis vinifera), 5'ss of exon 23
lower sequence: GRMZM2G376731_T01 (Zea mays), 5'ss of exon 23
AACACTTCTAAGCTGAAGGAAACTGTTTCAGTGGCGAATAATGCCTGTTGGGCAATTGGAGAATTAGCAGTTAAGgtatgttctccaattttttcttcagcaaaatcattccacatgatgtgcctttctgatttattgatctgtcttaaaagttgac---tggattttaacataagat
||| || ||||||| | || ||||| || || |||||||||||||| ||||||||||||||| | ||||| || | | | || | | | | | |||| || || | | || | | | | ||| | ||| | | || ||
AACCCTCAGTCTGTGAAGGATGCGGTATCAGTAGCTAACAATGCCTGTTGGGCTATTGGAGAATTAGCAATCAAGgttagtgc-ctacttctatacctatttggcttaacttacattttgctgctgttaaagttgaaactgtttggcatgggtttccccgtggtatgtcacttata--
upper sequence: Vv03s0038g02830.t01 (Vitis vinifera), 5'ss of exon 23
lower sequence: GLYMA10G42960.1 (Glycine max), 5'ss of exon 23
AACACTTCTAAGCTGAAGGAAACTGTTTCAGTGGCGAATAATGCCTGTTGGGCAATTGGAGAATTAGCAGTTAAGgtatgt--tctccaattttttcttcagcaaaatcattccacatg-atgtgcctttctgatttattgatctgtcttaaaagttgactggattttaacataagat
| | ||||||| | ||||| || ||||||| || |||||||| || |||||||||||||||||||||||||||||||| | | ||| | ||| | ||| | | ||| ||| | | | ||||| | | | | ||| | ||| | || |
GAGATTTCTAAGGTAAAGGAGGCTATTTCAGTAGCAAATAATGCATGCTGGGCAATTGGAGAATTAGCAGTTAAGgtatgcaatttttaatgctgctttctgataaaatgatagaaatgtatggaaactagaaactaattgacat-tgatggatattgtcataattaagaattagg--
upper sequence: Vv03s0038g02830.t01 (Vitis vinifera), 5'ss of exon 23
lower sequence: GLYMA20G24040.1 (Glycine max), 5'ss of exon 23
AACACTTCTAAGCTGAAGGAAACTGTTTCAGTGGCGAATAATGCCTGTTGGGCAATTGGAGAATTAGCAGTTAAGgtatgt--tctccaattttttcttcagcaaaatcattccacatgatgtgcctttctgatttattgatctgtcttaaaagttgactggattttaacataagat
| | ||||||| | ||||| || ||||||| || |||||||| || |||||||||||||||||||||||||||||||| | | ||| | ||| | ||| | | ||| | | | || | | | | | || | ||| | || |
GAGATTTCTAAGGTAAAGGAGGCTATTTCAGTAGCAAATAATGCATGCTGGGCAATTGGAGAATTAGCAGTTAAGgtatgcaatttttaatgatgctttctgataaaatgatagaaatgtatggaagctagaagctaatatgcattgatggatactgtcataattaataattagg--
upper sequence: Vv03s0038g02830.t01 (Vitis vinifera), 5'ss of exon 23
lower sequence: AT2G16950.2 (Arabidopsis thaliana), 5'ss of exon 23
--AACACTTCTAAGCTGAAGGAAACTGTTTCAGTGGCGAATAATGCCTGTTGGGCAATTGGAGAATTAGCAGTTAAGgta-tgttctccaattttttcttcagcaaaatcattccacatgatgtgcctttctgatttattgatctgtcttaaaagttgactggattttaacataagat
|| || | | || |||| |||| || || |||||||| |||||||| |||||||||||||| || |||||| | | | ||||||| | | | ||| || | ||| || | | | | || | || ||| | || | |
AGTGCAAACCTTAA-TAGAGAAAACC-TTTCTGTCGCAAATAATGCTTGTTGGGCCATTGGAGAATTAGCGGTCAAGgtaataccaaaatactatttcttctgttgta-------gcttgaagt----tcctggttaa--aagcagactcgtga-ctggtaggaactcaatgtttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|34550426|gb|CF518644.1|CF518644EST: TTTCAGTGGCGAATAATGCCTGTTGGGCAATTGGAGAATTAGCAGTTAAG GTTCATCAAGAAGTTTCTCCAATT
genomic: TTTCAGTGGCGAATAATGCCTGTTGGGCAATTGGAGAATTAGCAGTTAAGgtatgttctc ... tcaatttcagGTTCATCAAGAAGTTTCTCCAATT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AACACTTCTAAGCTGAAGGAAACTGTTTCAGTGGCGAATAATGCCTGTTGGGCAATTGGAGAATTAGCAGTTAAGgtatgttctccaattttttcttcagcaaaatcattccacatgatgtgcctttctgatttattgatctgtcttaaaagttgactggattttaacataagat
- - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agcaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacataa