1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
AGGGCCTTAAATGCCCTTCCTTCAAGAGGTCTGACATCTGATCACCCAGAGTTTCGGCAGCATTTGGGCGACCAAAGGAATGAAAGATTTCCCTCCGGAGgtaattttggttgccacccatattagttcatttgtttttccctgttttgctttgttgaaaaacccctgataggaagatgatgtagcaagtgcag
species | Vitis vinifera |
transcript | Vv00s0652g00030.t01 |
intron # | 23 |
splice site | 5' |
intron type | U2 |
EST: GCATTTGGGCGACCAAAGGAATGAAAGATTTCCCTCTGGAGCAAGTGCAG TGACCAGCGGAACATTAGATGCTATTAGGGAGAGGATGAAGAGCATCCAGEST: gi|110375502|gb|EC940491.1|EC940491
genomic: GCATTTGGGCGACCAAAGGAATGAAAGATTTCCCTC-----C--G-G-AGgtaattttgg ... gcaagtgcagTAACCAGCGGAACATTAGATGCTATTAGGGAGAGGATGAAGAGCATCCAG
EST: GTTTCGGCAGCATTTGGGCGACCAAAGGAATGAAAGATTTCCCTCCGGAG TGACCAGCGGAACATTAGATGCTATTAGGGAGAGGATGAAGAGCATCCAGTEST: gi|110389750|gb|EC954613.1|EC954613
genomic: GTTTCGGCAGCATTTGGGCGACCAAAGGAATGAAAGATTTCCCTCCGGAGgtaattttgg ... gcaagtgcagTAACCAGCGGAACATTAGATGCTATTAGGGAGAGGATGAAGAGCATCCAGT
EST: GTTTCGGCAGCATTTGGGCGACCAAAGGAATGAAAGATTTCCCTCCGGAG TGACCAGCGGAACATTAGATGCTATTAGGGAGAGGATGAAGAGCATCCAGTEST: gi|30301267|gb|CB978061.1|CB978061
genomic: GTTTCGGCAGCATTTGGGCGACCAAAGGAATGAAAGATTTCCCTCCGGAGgtaattttgg ... gcaagtgcagTAACCAGCGGAACATTAGATGCTATTAGGGAGAGGATGAAGAGCATCCAGT
EST: GTTTCGGCAGCATTTGAGCGACCAAAGGAATGAAAGGTTTCCCTCTGGAG TGACCAGCGGAACATTAGATGCTATTAGGGAGAGGATGAAGAGCATCCAGTEST: gi|30299345|gb|CB976139.1|CB976139
genomic: GTTTCGGCAGCATTTGGGCGACCAAAGGAATGAAAGATTTCCCTCCGGAGgtaattttgg ... gcaagtgcagTAACCAGCGGAACATTAGATGCTATTAGGGAGAGGATGAAGAGCATCCAGT
EST: GTTTCGGCAGCATTTGGGCGACCAAAGGAATGAAAGATTTCCCTCTGGAG TGACCAGCGGAACATTAGATGCTATTAGGGAGAGGATGAAGAGCATCCAGTEST: gi|110393973|gb|EC958256.1|EC958256
genomic: GTTTCGGCAGCATTTGGGCGACCAAAGGAATGAAAGATTTCCCTCCGGAGgtaattttgg ... gcaagtgcagTAACCAGCGGAACATTAGATGCTATTAGGGAGAGGATGAAGAGCATCCAGT
EST: GTTTCGGCAGCATTTGGGCGACCAAAGGAATGAAAGATTTCCCTCTGGAG TGACCAGCGGAACATTAGATGCTATTAGGGAGAGGATGAAGAGCATCCAGTEST: gi|71882640|gb|DT031695.1|DT031695
genomic: GTTTCGGCAGCATTTGGGCGACCAAAGGAATGAAAGATTTCCCTCCGGAGgtaattttgg ... gcaagtgcagTAACCAGCGGAACATTAGATGCTATTAGGGAGAGGATGAAGAGCATCCAGT
EST: GTTTCGGCAGCATTTGGGCGACCAAAGGAATGAAAGATTTCCCTCTGGAG TGACCAGCGGAACATTAGATGCTATTAGGGAGAGGATGAAGAGCATCCAGTEST: gi|30301485|gb|CB978279.1|CB978279
genomic: GTTTCGGCAGCATTTGGGCGACCAAAGGAATGAAAGATTTCCCTCCGGAGgtaattttgg ... gcaagtgcagTAACCAGCGGAACATTAGATGCTATTAGGGAGAGGATGAAGAGCATCCAGT
EST: GTTTCGGCAGCATTTGAGCGACCAAAGGAATGAAAGGTTTCCCTCTGGAG TGACCAGCGGAACATTAGATGCTATTAGGGAGAGGATGAAGAGCATCCAGTEST: gi|77588937|gb|DV223719.1|DV223719
genomic: GTTTCGGCAGCATTTGGGCGACCAAAGGAATGAAAGATTTCCCTCCGGAGgtaattttgg ... gcaagtgcagTAACCAGCGGAACATTAGATGCTATTAGGGAGAGGATGAAGAGCATCCAGT
EST: GTTTCGGCAGCATTTGGGCGACCAAAGGAATGAAAGATTTCCCTCTGGAG TGACCAGCGGAACATTAGATGCTATTAGGGAGAGGATGAAGAGCATCCAGTEST: gi|71886760|gb|DT035815.1|DT035815
genomic: GTTTCGGCAGCATTTGGGCGACCAAAGGAATGAAAGATTTCCCTCCGGAGgtaattttgg ... gcaagtgcagTAACCAGCGGAACATTAGATGCTATTAGGGAGAGGATGAAGAGCATCCAGT
EST: GTTTCGGCAGCATTTGGGCGACCAAAGGAATGAAAGATTTCCCTCTGGAG TGACCAGCGGAACATTAGATGCTATTAGGGAGAGGATGAAGAGCATCCAGTEST: gi|71889922|gb|DT038977.1|DT038977
genomic: GTTTCGGCAGCATTTGGGCGACCAAAGGAATGAAAGATTTCCCTCCGGAGgtaattttgg ... gcaagtgcagTAACCAGCGGAACATTAGATGCTATTAGGGAGAGGATGAAGAGCATCCAGT
EST: GTTTCGGCAGCATTTGGGCGACCAAAGGAATGAAAGATTTCCCTCTGGAG TGACCAGCGGAACATTAGATGCTATTAGGGAGAGGATGAAGAGCATCCAGTEST: gi|27584894|gb|CB007589.1|CB007589
genomic: GTTTCGGCAGCATTTGGGCGACCAAAGGAATGAAAGATTTCCCTCCGGAGgtaattttgg ... gcaagtgcagTAACCAGCGGAACATTAGATGCTATTAGGGAGAGGATGAAGAGCATCCAGT
EST: GTTTCGGCAGCATTTGGGCGACCAAAGGAATGAAAGATTTCCCTCTGGAG TGACCAGCGGAACATTAGATGCTATTAGGGAGAGGATGAAGAGCATCCAGTEST: gi|71886201|gb|DT035256.1|DT035256
genomic: GTTTCGGCAGCATTTGGGCGACCAAAGGAATGAAAGATTTCCCTCCGGAGgtaattttgg ... gcaagtgcagTAACCAGCGGAACATTAGATGCTATTAGGGAGAGGATGAAGAGCATCCAGT
EST: GTTTCGGCAGCATTTGGGCGACCAAAGGAATGAAAGATTTCCCTCTGGAG TGACCAGCGGAACATTAGATGCTATTAGGGAGAGGATGAAGAGCATCCAGT
genomic: GTTTCGGCAGCATTTGGGCGACCAAAGGAATGAAAGATTTCCCTCCGGAGgtaattttgg ... gcaagtgcagTAACCAGCGGAACATTAGATGCTATTAGGGAGAGGATGAAGAGCATCCAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGGCCTTAAATGCCCTTCCTTCAAGAGGTCTGACATCTGATCACCCAGAGTTTCGGCAGCATTTGGGCGACCAAAGGAATGAAAGATTTCCCTCCGGAGgtaattttggttgccacccatattagttcatttgtttttccctgttttgctttgttgaaaaacccctgataggaagatgatgtagcaagtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA