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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCCAGTGGAAAGTTTCAGTTCAAGGAAGTTGAGGGCAGCCAGGAGGTGATTGAGGCTGACCTCGTTCTGCTAGCCATGGGATTCCTTGGCCCTGAGGTGgtaagtactctataacttcatcccaccaatgacttgttcctccaaattttctgattttggttaatggttcttgtactcttcaaacttccag

Basic information

species Vitis vinifera
transcript Vv16s0098g00290.t01
intron # 22
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0098g00290.t01 (Vitis vinifera), 5'ss of exon 22
lower sequence: GLYMA04G41540.1 (Glycine max), 5'ss of exon 22
TGCCAGTGGAAAGTTTCAGTTCAAGGAAGTTGAGGGCAGCCAGGAGGTGATTGAGGCTGACCTCGTTCTGCTAGCCATGGGATTCCTTGGCCCTGAGGTGgtaagtactct--ataacttcatcccaccaa--tgacttgttcctccaaattttctgattttg-gttaatggttc---ttgtactcttcaaacttccag---------------------------------------
||  | ||| | |||||| || |||||| ||||||||  | ||||| | |||||||||||||| ||| | || ||||||||||||||||||||||||   ||||||| ||   ||| ||||||| |   |   | ||    |     |  |     ||  |||    |||   |    ||| | | | ||   ||                                           
TGAAACTGGGAGGTTTCAATTTAAGGAAATTGAGGGCTCCGAGGAGATTATTGAGGCTGACCTAGTTTTACTGGCCATGGGATTCCTTGGCCCTGAGTCTgtaagtattcataatagcttcatctctttatgtttacagaatgtggtagttgagaagaagttgcaacaataaattgaattgaaatgtccattattaggaagtggctaatgattgatatttctgctcttggttttgcag

upper sequence: Vv16s0098g00290.t01 (Vitis vinifera), 5'ss of exon 22
lower sequence: GLYMA14G32500.1 (Glycine max), 5'ss of exon 23
TGCCAGTGGAAAGTTTCAGTTCAAGGAAGTTGAGGGCAGCCAGGAGGTGATTGAGGCTGACCTCGTTCTGCTAGCCATGGGATTCCTTGGCCCTGAGGTGgtaagtactctata-acttcatcccaccaatgacttgttcctccaaattttctgattttggtta--atggttcttgtactcttcaaacttccag------
||  | ||||||||||||||| |||||| |||||||     ||||| | |||||||||||||| ||| | |||||||||||||||||||| || |||   ||||||| ||   | | |  ||      |||    | |      || |||  | | |    ||   ||  || | |||      ||  |   ||      
TGAAACTGGAAAGTTTCAGTTTAAGGAAATTGAGGGATCGGAGGAGATTATTGAGGCTGACCTAGTTTTACTAGCCATGGGATTCCTTGGTCCAGAGTCTgtaagtattcatcataataaattatcttaattttgtatgttcagaagtttcttaactgaacttggtatatttatggtagatgagaagttaagagaaataa

upper sequence: Vv16s0098g00290.t01 (Vitis vinifera), 5'ss of exon 22
lower sequence: GLYMA06G13280.2 (Glycine max), 5'ss of exon 22
TGCCAGTGGAAAGTTTCAGTTCAAGGAAGTTGAGGGCAGCCAGGAGGTGATTGAGGCTGACCTCGTTCTGCTAGCCATGGGATTCCTTGGCCCTGAGGTGgtaagtactct--ataacttcatccc----------acc-aatgacttgttcctccaaattttctgattttggttaatggttcttgtactcttcaaacttccag----------------------------------------------------------------------------------
||  | ||| | |||||| || |||||| ||||||||  | | ||| |  ||||||||||||| ||| | || ||||||||||||||||||||||||   ||||||| ||   ||| ||||||| |          ||| ||||   | ||  ||   | |   || |  ||||| |    ||        |  |||  | |                                                                                    
TGAAACTGGGAGGTTTCAATTTAAGGAAATTGAGGGCTCCGAAGAGATTCTTGAGGCTGACCTAGTTTTACTGGCCATGGGATTCCTTGGCCCTGAGCCTgtaagtattcatgatagcttcatctcttagttgttaaccgaatgtggtatttgtctctactgcttgttggtggttgaaaagtcgaaagaaatgaaaagatgctaaaagaagttgaaacaataaattaaattgaaatgtccattaggaagtggctaatgactgatctttttgctcttggtcttgcag

upper sequence: Vv16s0098g00290.t01 (Vitis vinifera), 5'ss of exon 22
lower sequence: GLYMA19G16450.1 (Glycine max), 5'ss of exon 18
TGCCAGTGGAAAGTTTCAGTTCAAGGAAGTTGAGGGCAGCCAGGAGGTGATTGAGGCTGACCTCGTTCTGCTAGCCATGGGATTCCTTGGCCCTGAGGTGgtaagtactctataacttcatcccaccaatgacttgt-tcctccaaattttctgattttggttaatggtt--cttgtactcttcaaacttccag-------
||| |  |  ||||||||||| |||||  |||| ||     ||||| | |||||||||||||| ||| | |||||||||||||||||||| || |||   ||||||| || || |    |    | |   |  |||| || ||  || ||||| |  |    |  | ||    || |  |     ||     ||       
TGCAACCGACAAGTTTCAGTTTAAGGAGATTGAAGGGTCAGAGGAGATTATTGAGGCTGACCTAGTTTTACTAGCCATGGGATTCCTTGGTCCCGAGTCTgtaagtattc-atcataataaattaacttcgttttgtatcttcagaagtttcttaactgaacttttagtatatttatggtaaatgaaaagtaagaaataag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110395579|gb|EC961246.1|EC961246
EST:     TTGAGGCTGACCTCGTTCTGCTAGCCATGGGATTCCTTGGCCCTGAGGCG                         ACAGTAGCAGAGAAGCTGGGGTTGGAGCGAGACAACCGATCAAACTTGAAG
genomic: TTGAGGCTGACCTCGTTCTGCTAGCCATGGGATTCCTTGGCCCTGAGGTGgtaagtactc ... aaacttccagACAGTAGCAGAGAAGCTGGGGTTGGAGCGAGACAACCGATCAAACTTAAAG