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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCATTGGAAACCCATTATTATGTGGCAACTGGTTGGGATCAATCTGTGGCCCATATGTTCCCAAATCCAGAGgtactccactaaaactttagtttttttagttctgatggatataattttttcttttttgcgtggtgattgggattttggtgctaatgtttaccatctctttataatctttgcaccag

Basic information

species Vitis vinifera
transcript Vv16s0022g02030.t01
intron # 22
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0022g02030.t01 (Vitis vinifera), 5'ss of exon 22
lower sequence: GLYMA16G32830.1 (Glycine max), 5'ss of exon 23
CTTCATTGGAAACCCATTATTATGTGGCAACTGGTTGGGATCAATCTGTGGCCCATATGTTCCCAAATCCAGAGgtac------tcca-ctaaaac--tttagtttttttagttctgatggatataattttttcttttttgcgtggtgattgggattttggtgcta-atgtttacca---tctctttataatctttgcaccag
|||||||||||| |||||||||||||| || ||||| ||||| || ||||  |  ||  | || |||||||||||| |      |||| || |||    ||  |  ||  | || | ||  ||||      ||  ||| || | ||| |   | ||||   | | |  | || |  |   |   | |  | | |||    |||
CTTCATTGGAAATCCATTATTATGTGGAAATTGGTTAGGATCCATATGTGATCTTTACATGCCAAAATCCAGAGgtgcgtaacatccatctgaaatgacttgatagttgcaattat-atttatatgtaacattggtttgtgtggggtaaaaagtatttcaattcaatgtattaatgaaacttattctgcacttttttgttcag

upper sequence: Vv16s0022g02030.t01 (Vitis vinifera), 5'ss of exon 22
lower sequence: GLYMA09G27950.1 (Glycine max), 5'ss of exon 22
CTTCATTGGAAACCCATTATTATGTGGCAACTGGTTGGGATCAATCTGTGGCCCATATGTTCCCAAATCCAGAGgtactccactaaaactttagtttttttagttctgatggatataattttttct--------tttttgcgtggtgattgggattttggtgc----taatgtttaccatctctttataatctttgcaccag
|||||| ||||| |||||||||||||| || ||||||||||| || ||||  || ||  | || ||||||| |||| |   ||    |  | |  |   | | |  | |   ||||| || | | |        ||| ||   ||| |   | || |   | |    || |  | |  |  | ||| || | |||    |||
CTTCATGGGAAATCCATTATTATGTGGAAATTGGTTGGGATCCATATGTGATCCTTACATGCCAAAATCCAAAGgtgcgtgacatccatctgaaatgactcaatagttacacatatatttatatatagcattggtttgtgatgggtaaaaagtatctgaatacaatgtattaatgaaaacttatttgtacttttttgttcag