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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTGGACTGCGATTGAAGCGTGATATAACAGAGTATGGTGAATTTGTGCGCAGTTTTAATGCTCCTACCGTGGATGAGAAATTTGAATTGTTGGGCATgtaagtttcggaagtttttgaatatctcagatctttcatttagcattcttaaaaatctcactctaccaacgactctttttgtctccag

Basic information

species Vitis vinifera
transcript Vv15s0046g02200.t01
intron # 22
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0046g02200.t01 (Vitis vinifera), 5'ss of exon 22
lower sequence: GLYMA07G05160.1 (Glycine max), 5'ss of exon 22
TGGTGGACTGCGATTGAAGCGTGATATAACAGAGTATGGTGAATTTGTGCGCAGTTTTAATGCTCCTACCGTGGATGAGAAATTTGAATTGTTGGGCATgtaagtttcggaagtttttgaatatctcagatctttc---atttagcattcttaaaaatctcactctaccaacgactctttttgtctccag
||| ||  ||||| |||||||||| || || || ||||| |||||| |||| ||||| ||||||||| | || ||||| || ||||||||||||||||||||||||     |  |    |   | ||| || |||     | |  |||| || | |  || | |     |||   |  | | |       
TGGAGGGTTGCGACTGAAGCGTGACATTACTGAATATGGAGAATTTCTGCGTAGTTTCAATGCTCCTTCTGTTGATGAAAAGTTTGAATTGTTGGGCATgtaagttgaacgacatgcaaatcttttcaaattttttcctgtctcccattttttacatactaatttc-ttaacactttctatag-------

upper sequence: Vv15s0046g02200.t01 (Vitis vinifera), 5'ss of exon 22
lower sequence: GLYMA16G01660.1 (Glycine max), 5'ss of exon 22
TGGTGGACTGCGATTGAAGCGTGATATAACAGAGTATGGTGAATTTGTGCGCAGTTTTAATGCTCCTACCGTGGATGAGAAATTTGAATTGTTGGGCATgtaagtttcggaagtttttgaatatctcagatctttc---atttagcattcttaaaaatctcactctaccaacgactctttttgtctccag
||| ||  ||||| |||||||||| || || || ||||| |||||| |||| ||||| ||||||||  | || ||||| || |||||||| ||||||||||||||||   ||  |    |   | ||| || |||     | |  || | || | |  || | |     |||   |  | | |       
TGGGGGGTTGCGACTGAAGCGTGACATTACTGAATATGGAGAATTTCTGCGTAGTTTCAATGCTCCGTCTGTTGATGAAAAGTTTGAATTATTGGGCATgtaagtttaacaacatgcaaatcttttcaaattttttcctgtctcccagtttttacatactaatttc-ttaacactttctatag-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30300105|gb|CB976899.1|CB976899
EST:     CGCAGTTTTAATGCTCCTACCGTGGATGAGAAATTTGAATTGTTGGGCAT                         TATGGCCAATGTCTTTATTGTTGCTCCTGAAAGTCTCTCCAGTTTGTTTGA
genomic: CGCAGTTTTAATGCTCCTACCGTGGATGAGAAATTTGAATTGTTGGGCATgtaagtttcg ... ttgtctccagTATGGCCAATGTCTTTATTGTTGCTCCTGAAAGTCTCTCCAGTTTGTTTGA
EST: gi|30321002|gb|CD004264.1|CD004264
EST:     ATGAGAAATTTGAATTGTTGGGCAT                         TATGGCCAATGTCTTTATTGTTGCTCCTGAAAGTCTCTCCAGTTTGTTTGA
genomic: ATGAGAAATTTGAATTGTTGGGCATgtaagtttcg ... ttgtctccagTATGGCCAATGTCTTTATTGTTGCTCCTGAAAGTCTCTCCAGTTTGTTTGA
EST: gi|30320383|gb|CD003645.1|CD003645
EST:     CGCAGTTTTAATGCTCCTACCGTGGATGAGAAATTTGAATTGTTGGGCAT                         TATGGCCAATGTCTTTATTGTTGCTCCTGAAAGTCTCTCCAGTTTGTTTGA
genomic: CGCAGTTTTAATGCTCCTACCGTGGATGAGAAATTTGAATTGTTGGGCATgtaagtttcg ... ttgtctccagTATGGCCAATGTCTTTATTGTTGCTCCTGAAAGTCTCTCCAGTTTGTTTGA
EST: gi|30320366|gb|CD003628.1|CD003628
EST:     CGCAGTTTTAATGCTCCTACCGTGGATGAGAAATTTGAATTGTTGGGCAT                         TATGGCCAATGTCTTTATTGTTGCTCCTGAAAGTCTCTCCAGTTTGTTTGA
genomic: CGCAGTTTTAATGCTCCTACCGTGGATGAGAAATTTGAATTGTTGGGCATgtaagtttcg ... ttgtctccagTATGGCCAATGTCTTTATTGTTGCTCCTGAAAGTCTCTCCAGTTTGTTTGA
EST: gi|110373393|gb|EC937624.1|EC937624
EST:     CGCAGTTTTAATGCTCCTACCGTGGATGAGAAATTTGAATTGTTGGGCAT                         TATGGCCAATGTCTTTATTGTTGCTCCTGAAAGTCTCTCCAGTTTGTTTGA
genomic: CGCAGTTTTAATGCTCCTACCGTGGATGAGAAATTTGAATTGTTGGGCATgtaagtttcg ... ttgtctccagTATGGCCAATGTCTTTATTGTTGCTCCTGAAAGTCTCTCCAGTTTGTTTGA