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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTACTTCTGGAATGAGCCCGGCATTCAATCTCTATGGATGCACTCTAATTGgtaattttaatttctagtatatccccaatgttacaatggcatggctgatttaaatattctgtctttttaatgcatagtcacttgggctctatatcaaccg...

Basic information

species Vitis vinifera
transcript Vv14s0128g00100.t01
intron # 22
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0128g00100.t01 (Vitis vinifera), 5'ss of exon 22
lower sequence: GLYMA10G29770.1 (Glycine max), 5'ss of exon 13
GTTACTTCTGGAATGAGCCCGGCATTCAATCTCTATGGATGCACTCTAATTGgtaattt--taatttctagtatatccccaatgttacaatggcatggctgatttaaatattctgtctttttaatgcatagtcacttgggctctatatcaaccg
||||||||||| |||||||| ||||| ||||| |||||||||||  |||||||||| ||  ||   | |     |    |||| | ||||||       | |   ||| ||||    |  | |||  |||      |        ||  |||| 
GTTACTTCTGGGATGAGCCCTGCATTAAATCTATATGGATGCACATTAATTGgtaacttcctatcctttcactaaataacaat-taacaatgatgccagt-accaaaacattcatattcctgaattaatatctggatatctctgttaggaacct

upper sequence: Vv14s0128g00100.t01 (Vitis vinifera), 5'ss of exon 22
lower sequence: AT3G05190.1 (Arabidopsis thaliana), 5'ss of exon 12
GTTACTTCTGGAATGAGCCCGGCATTCAATCTCTATGGATGCACTCTAATTGgtaa--ttttaatttctagtatatccccaatgttacaatggcatggctgatttaaatattctgtctttttaatgcatagtcacttgggctctatatcaaccg-
|||||||||||||||||||| ||||  ||||  ||||| |||||||| ||||||||   ||| |  | ||  | | |  | | |||    |   |||  |   ||  |  ||   |    | || |  | ||    |    |  | || |  |  
GTTACTTCTGGAATGAGCCCTGCATATAATCGATATGGGTGCACTCTTATTGgtaaacctttcagctttatgagaacaacca-gttgtgctaatatgattaccttggagtttggtttacatgaaagatttgtgttctttctttcaaataatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33401997|gb|CF207624.1|CF207624
EST:     TACTTCTGGAATGAGCCCGGCATTCAATCTCTATGGATGCACTCTAATTG                         TGCTTGCTGAATGGAAGCCACCTGTCTATGACAATACAAAGGGTATTACTC
genomic: TACTTCTGGAATGAGCCCGGCATTCAATCTCTATGGATGCACTCTAATTGgtaattttaa ... aaaaatgcagTGCTTGCTGAATGGAAGCCACCCGTCTATGACAATACAAAGGGTATTACTC
EST: gi|161706689|gb|FC055067.1|FC055067
EST:     TACTTCTGGAATGAGCCCGGCATTCAATCTCTATGGATGCACTCTAATTG                         TGCTTGCTGAATGGAAGCCACCTGTCTATGACAATACAAAGGGTATTACTC
genomic: TACTTCTGGAATGAGCCCGGCATTCAATCTCTATGGATGCACTCTAATTGgtaattttaa ... aaaaatgcagTGCTTGCTGAATGGAAGCCACCCGTCTATGACAATACAAAGGGTATTACTC