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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGAATCAACTCCTGATGCAATGTTTCGTACTGATGCTGTAAAATATGCATTAATTGGGTTGATGAGGGATCTTCGAGGAATTGCAATGGCAACAAATAGgtttgcacgtatgctatttttgggttcttcattgtcaactaaggtcaaccggtcttatattttctgtctgaatgtctttcag

Basic information

species Vitis vinifera
transcript Vv13s0067g01920.t01
intron # 22
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0067g01920.t01 (Vitis vinifera), 5'ss of exon 22
lower sequence: GLYMA04G00430.1 (Glycine max), 5'ss of exon 20
TAGAATCAACTCCTGATGCAATGTTTCGTACTGATGCTGTAAAATATGCATTAATTGGGTTGATGAGGGATCTTCGAGGAATTGCAATGGCAACAAATAGgtttgcacgtatgctatttttgggttcttcattgtcaactaagg---tcaaccggtct-tatattttctgtctgaatgtctttcag
| |||||||||||||||||| | ||||| || ||||||||||  |||||| |  |||| ||||||||||| ||| |||||||||||||||| ||||| ||||| | |  | |||| ||| ||  || ||||     |   ||||   | ||| | ||| | | ||||   | |   |   | | ||
TGGAATCAACTCCTGATGCAGTATTTCGAACAGATGCTGTAAGGTATGCACTTGTTGGTTTGATGAGGGACCTTAGAGGAATTGCAATGGCCACAAACAGgttggtagttgtgctgtttctg--ttattcaggcagagggaaggaattaaactgatctctctgtttttcatatttgtaattcttag

upper sequence: Vv13s0067g01920.t01 (Vitis vinifera), 5'ss of exon 22
lower sequence: GLYMA06G00520.1 (Glycine max), 5'ss of exon 14
TAGAATCAACTCCTGATGCAATGTTTCGTACTGATGCTGTAAAATATGCATTAATTGGGTTGATGAGGGATCTTCGAGGAATTGCAATGGCAACAAATAGgtttgcacgtatgctatttttgggttcttcattgtcaactaagg---tcaaccggtct-tatattttctgtctgaatgtctttcag
| |||||||||||||||||| | ||||| || ||||||||||  |||||| |  |||| ||||||||||| ||| |||||||||||||||| ||||| ||||| | |  | |||| ||| ||  || ||||   | |   ||||   | ||| | ||| | | ||||   | |   | | | | ||
TGGAATCAACTCCTGATGCAGTATTTCGAACAGATGCTGTAAGGTATGCACTTGTTGGTTTGATGAGGGACCTTAGAGGAATTGCAATGGCCACAAACAGgttggtagttgtgctgtttctg--tttttcaagctgagggaaggaattaaactgatctctctgtttttcatatttgtatttcttag

upper sequence: Vv13s0067g01920.t01 (Vitis vinifera), 5'ss of exon 22
lower sequence: AT5G06120.3 (Arabidopsis thaliana), 5'ss of exon 21
TAGAATCAACTCCTGATGCAATGTTTCGTACTGATGCTGTAAAATATGCATTAATTGGGTTGATGAGGGATCTTCGAGGAATTGCAATGGCAACAAATAGgttt-gcacgtatgctatttttgggttcttcattgtca-actaaggtcaaccggtcttatattttctgtctgaatgtctttcag
| |||||||| || ||| | |||||||| ||||||||||| || | |||  | || || |||||||||||| |  |||||||||||||||| || |  |||||| |     ||    ||  |  |   | ||| | ||   ||   ||    | | ||||     || |||   ||  ||||||
TGGAATCAACACCAGATTCGATGTTTCGCACTGATGCTGTGAAGTTTGCTCTGATCGGATTGATGAGGGATTTAAGAGGAATTGCAATGGCTACTAGCAGgttttgagttcatctagttactttgacatccatagacatgttacaatcttatgat-ttattgaagctttctctttggatttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351036060|gb|FQ463905.1|FQ463905
EST:     TTAATTGGGTTGATGAGGGATCTTCGAGGAATTGCAATGGCAACAAATAG                         CCGCAGAACTTACGGGCTTCTATTTGATTGGTTGTATCCTGCACATATGCC
genomic: TTAATTGGGTTGATGAGGGATCTTCGAGGAATTGCAATGGCAACAAATAGgtttgcacgt ... tgtctttcagCCGCAGAACTTACGGGCTTCTATTTGATTGGTTGTATCCTGCACATATGCC
EST: gi|351026572|gb|FQ432470.1|FQ432470
EST:     TTAATTGGGTTGATGAGGGATCTTCGAGGAATTGCAATGGCAACAAATAG                         CCGCAGAACTTACGGGCTTCTATTTGATTGGTTGTATCCTACACATATGCC
genomic: TTAATTGGGTTGATGAGGGATCTTCGAGGAATTGCAATGGCAACAAATAGgtttgcacgt ... tgtctttcagCCGCAGAACTTACGGGCTTCTATTTGATTGGTTGTATCCTGCACATATGCC