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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAAGCTGCTGAATCTTTGGCTGATCCTGAAGAGTATCCTAATTTATTTGAGGACTGGCAAGTTGGTCTTGCCATTGAATCTAAAGTTGCCGAGACAAGgtgccattacatggccttctgctatgttgatttctctgtatttatctaactgttgtatttttatgttgctcacattatcgtaaatacctttctggaattt...

Basic information

species Vitis vinifera
transcript Vv09s0002g04810.t01
intron # 22
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 22
lower sequence: LOC_Os06g05180.1 (Oryza sativa), 5'ss of exon 22
CAAAAGCTGCTGAATCTTTGGCTGATCCTGAAGAGTATCCTAATTTATTTGAGGACTGGCAAGTTGGTCTTGCCATTGAATCTAAAGTTGCCGAGACAAGgtgcca-ttacatggccttctgctatgttgatt-tctctgtatttatctaactgttgtattttta-----tgttgctcacattatcgtaaatacctttctggaattt----------
|||||||||| || ||| |||| ||||||   |||||||| ||||||||||| |||||||| ||||  ||| |  | |||   || |||||       ||||   | ||||  |     ||||| | || ||| |  |  | |    ||| |  || | ||   |     | |||   | |  | | |   |||  |  |    | |          
CAAAAGCTGCAGAGTCTCTGGCAGATCCTTCTGAGTATCCAAATTTATTTGAAGACTGGCAGGTTGCACTTACTGTAGAAAAGAATGTTGCTTCTCGGAGgtaaaaattaccagagaagctgctttttttattattaccatgtaacgctaccaattcttttggaagaaactattgtataaacaaacctgg-tacaatgataaggtctctttcttcag

upper sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 22
lower sequence: GLYMA07G03890.1 (Glycine max), 5'ss of exon 22
CAAAAGCTGCTGAATCTTTGGCTGATCCTGAAGAGTATCCTAATTTATTTGAGGACTGGCAAGTTGGTCTTGCCATTGAATCTAAAGTTGCCGAGACAAGgt--gccattacatg---gccttctgctatgttgatttct-ctgtatttatcta-actgttgtatttt-tatgttgctcacattatc---gtaaatacctttctggaattt--------------------
|||||||||||||||| |||||||||||||| || ||||||||||| ||||| || ||||||||||  || ||  |||||||||||| | | ||  ||||||  |     | |||    | ||||   | ||   || |  || |  | || ||   ||| || |||| | || |    | |  |       ||||    ||    || ||                    
CAAAAGCTGCTGAATCATTGGCTGATCCTGAGGAATATCCTAATTTGTTTGATGATTGGCAAGTTGCACTAGCTGTTGAATCTAAAGCTACGGAAGCAAGgtcagtggggaaatgtgtactttcttacaagtatcttgcaactttggtaatttatgttgtagtgttttgtgtgctagctaaaccacttcaacaaatgttctttactaacttattttgtttgtttattacag

upper sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 22
lower sequence: GLYMA08G22140.1 (Glycine max), 5'ss of exon 22
CAAAAGCTGCTGAATCTTTGGCTGATCCTGAAGAGTATCCTAATTTATTTGAGGACTGGCAAGTTGGTCTTGCCATTGAATCTAAAGTTGCCGAGACAAGgt--gccattacatg---gccttctgctatgttgatttct-ctgtatttatcta-actgttgtatttt-tatgttgc-tcacattatcgtaaatacctttctggaattt------------------
||||||| || ||||| |||||||||||||| |||||||||||||| ||||| || ||||||||||  |||||  |||||||||||| | | || |||||||  |     | |||    | ||||   | ||   || |  || |  | || ||    || || |||| | || |    | | | | | ||  | | || ||    | |                  
CAAAAGCCGCCGAATCATTGGCTGATCCTGAGGAGTATCCTAATTTGTTTGATGATTGGCAAGTTGCACTTGCTGTTGAATCTAAAGCTACAGAAACAAGgtcagtggggaaatgcatactttctttcaagtatcttgcaactttgataatttatgtagtagtgttttgtgtgctaaacctcttcaacatatgttctttactaacttattttgtttgtttattatag

upper sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 22
lower sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 22
CAAAAGCTGCTGAATCTTTGGCTGATCCTGAAGAGTATCCTAATTTATTTGAGGACTGGCAAGTTGGTCTTGCCATTGAATCTAAAGTTGCCGAGACAAGgt-------gccattacatggccttctgc---tatgttgatttctctgtatttatctaactgttgtatttttatgttgctcacattatcgtaaatacctttctggaattt
|||||||||||||||| ||||||||||||||||| ||||| ||||| ||||| || ||||| ||||  || ||  | |||||||||| ||  || |||||||       |  | | |||    |  |||   ||| ||||  | | | || |||    | |  ||| ||||| |||     ||||  |      |    || |   ||  
CAAAAGCTGCTGAATCATTGGCTGATCCTGAAGAATATCCAAATTTGTTTGAAGATTGGCAGGTTGCACTAGCTGTCGAATCTAAAGCTGTGGAAACAAGgtcagtgcagagaatgcatattttattgcatatatattgaaatgtatatagttagtagattagtgtttttttgtgtgcaaaacatctttaactgtgttcttttattatag

upper sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 22
lower sequence: GLYMA13G43680.1 (Glycine max), 5'ss of exon 22
CAAAAGCTGCTGAATCTTTGGCTGATCCTGAAGAGTATCCTAATTTATTTGAGGACTGGCAAGTTGGTCTTGCCATTGAATCTAAAGTTGCCGAGACAAGgt-------gccattacatggccttctgc---tatgttgatttctctgtatttatctaactgttgtatttttatgttgctcacattatcgtaaatacctttctggaattt
|||||||||||||||| |||||| |||||||||| ||||| ||||| ||||| || ||||||||||  || ||  | |||||||||| ||  || |||||||       |  | | ||     |  |||   ||| ||||  | |   || |||    | |  ||| ||||| |||     ||||  |     || |  || |   ||  
CAAAAGCTGCTGAATCATTGGCTAATCCTGAAGAATATCCAAATTTGTTTGAAGATTGGCAAGTTGCACTAGCTGTCGAATCTAAAGCTGTGGAAACAAGgtcagtgcagagaatgcaaattttattgcatgtatcttgaaatgtagatagttagtagattagtgtttttttgtgtgcaaaacatctttaactatgctcttttattatag

upper sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 22
lower sequence: AT1G79990.1 (Arabidopsis thaliana), 5'ss of exon 26
CAAAAGCTGCTGAATCTTTGGCTGATCCTGAAGAGTATCCTAATTTATTTGAGGACTGGCAAGTTGGTCTTGCCATTGAATCTAAAGTTGCCGAGACAAGgtgccattacatggccttctgctat--gttgatttctctgtatttatctaactgttgtatttttatgttgctcacattatcgtaaatac-ctttctggaattt-
|||| |||||||||||| |||||||||| ||||||||||| ||| | |||||||| |||||||| |  ||  || |||||  || || ||| ||||| ||||  | || | | |  | | |  ||  | | |||  |    |     || |       |  |||   ||  |   ||| | | |  ||  |  | | || |   
CAAAGGCTGCTGAATCTCTGGCTGATCCCGAAGAGTATCCCAATCTCTTTGAGGAGTGGCAAGTCGCCCTGTCCCTTGAAAATAGAGCTGCAGAGACGAGgtatcttttcgtcgt-tgccgtcattagcttattcttaaaaacagtgcttatgaggaaaccttt---ttaattgaattgtgggacttaagccatttagagtcat

upper sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 22
lower sequence: AT3G15980.1 (Arabidopsis thaliana), 5'ss of exon 22
CAAAAGCTGCTGAATCTTTGGCTGATCCTGAAGAGTATCCTAATTTATTTGAGGACTGGCAAGTTGGTCTTGCCATTGAATCTAAAGTTGCCGAGACAAGgtgccattaca-tggccttctgctatgttgatttctctgtatttatctaactgttgtattttta-tgttgctca-cattatcgtaaatacctttctggaattt
||||||| ||||||||||| |||||||||||||||||  | ||| | |||||||| |||||||||| |||| |  ||||| | ||   ||| ||||||||||  |    || |    |||||||||    |||| |||    |  ||    | | |  ||   | ||| | |||  | |    ||  |||||   |   ||| 
CAAAAGCAGCTGAATCTTTAGCTGATCCTGAAGAGTACTCAAATCTTTTTGAGGATTGGCAAGTTGCTCTTTCTGTTGAAGCGAACACTGCAGAGACAAGgtatccgagcacttattttctgctattcgcatttttcttccatggtc--gttatggctttcgaactgtagttcaataattatatatgtacctagatatgatt-

upper sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 22
lower sequence: AT1G52360.1 (Arabidopsis thaliana), 5'ss of exon 22
CAAAAGCTGCTGAATCTTTGGCTGATCCTGAAGAGTATCCTAATTTATTTGAGGACTGGCAAGTTGGTCTTGCCATTGAATCTAAAGTTGCCGAGACAAGgtg-ccattacatggccttctgct---atgttgatttctct------gtattt--atctaactgttgtatttttatgttgctcacattatcgtaaatacctttctggaattt-----------------------------------------------------
||||||| || |||||||||||||||||||| |||||  | ||| | ||||| || |||||||||| |||| |  | ||| |||||| ||  ||||||||||   |  | |||    || ||||    |||   |||||||      || |||  ||| | | |       || ||        |||   ||||   |    || ||| | |                                                     
CAAAAGCAGCAGAATCTTTGGCTGATCCTGAGGAGTACTCAAATCTTTTTGAAGATTGGCAAGTTGCTCTTTCTGTGGAAGCTAAAGCTGTAGAGACAAGgtaatcgctgcatt-ttttttgctcaagtgtgcttttctcttccatggtttttgaatcaagcagcgaatcgttaatacctactgcatccacgtagtgataactccggattatagatagcgacattctcagacctctctttaaaattgtctgttctccatttacag