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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGACGCTCCAGATGTTGAGGAGGAGAACATCATATCCAGACCTTCAGTTAGTTATGATGATTTGTGGGCCAAAACACTCTTAGAGACATCGGAAATGGAGgtacaagtttttcaaaaattctttcaactaggcatcagagacaatagtggattgaactgggcatgcgtgttaattcctatctagttgatgaagaaaatgagctatttgctaaatgtgctcctttcatcttgcag

Basic information

species Vitis vinifera
transcript Vv07s0031g02090.t01
intron # 22
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g02090.t01 (Vitis vinifera), 5'ss of exon 22
lower sequence: GLYMA08G03020.1 (Glycine max), 5'ss of exon 21
TGACGCTCCAGATGTTGAGGAGGAGAACATCATATCCAGACCTTCAGTTAGTTATGATGATTTGTGGGCCAAAACACTCTTAGAGACATCGGAAATGGAGgtacaagtttttcaaaaattctttcaactaggcatcagagacaatagtggattgaactgggcatgcgtgttaattcctatctagttgatgaagaaaatgagctatttgctaaatgtgctcctttcatcttgcag
 ||||| ||||| ||||| || ||||| || || || || ||||||||||| ||||||||| ||||||| ||||||||  ||||  | || ||  | ||||||    ||   | | |      |  | | || || | |    || ||   ||| |     ||      |  ||||||  | |  | |                                              
AGACGCCCCAGAAGTTGATGAAGAGAATATGATCTCTAGGCCTTCAGTTAGCTATGATGATATGTGGGCAAAAACACTTCTAGAATCTTCTGAGCTAGAGgtaaggattaagccaga------tgcattgggtattaaactttatggt---ttgtat----cacttaaatccattccttgcaa--taacag-------------------------------------------

upper sequence: Vv07s0031g02090.t01 (Vitis vinifera), 5'ss of exon 22
lower sequence: GLYMA05G36530.1 (Glycine max), 5'ss of exon 21
TGACGCTCCAGATGTTGAGGAGGAGAACATCATATCCAGACCTTCAGTTAGTTATGATGATTTGTGGGCCAAAACACTCTTAGAGACATCGGAAATGGAGgtacaagtttttcaaaaattctttca---actaggcatcagagacaatagtggattgaactgggcatgcgtgttaattcctatctagttgatgaagaaaatgagctatttgctaaatgtgctcctttcatcttgcag
 || || ||||| ||||| || ||||| || || || || ||||||||||| ||||||||| ||||||| ||||||||  ||||  | || ||  | ||||||    ||   | | |   |||| |   |  | ||||  |  |  | | |  || |       ||      || ||||||   ||  | |                                              
AGATGCCCCAGAAGTTGATGAAGAGAATATGATCTCTAGGCCTTCAGTTAGCTATGATGATATGTGGGCAAAAACACTTCTAGAATCGTCTGAGCTAGAGgtaatgattaagccagatcccttttacatatgatgcattgggtattaaaatttatggtttgtatcacttaaattcattcct--ttaaataacag-------------------------------------------

upper sequence: Vv07s0031g02090.t01 (Vitis vinifera), 5'ss of exon 22
lower sequence: AT2G07360.1 (Arabidopsis thaliana), 5'ss of exon 22
TGACGCTCCAGATGTTGAGGAGGAGAACATCATATCCAGACCTTCAGTTAGTTATGATGATTTGTGGGCCAAAACACTCTTAGAGACATCGGAAATGGAGgtacaagtttttcaaaaattctttcaactaggcatcagagacaatagtggattgaactgggcatgcgtgttaattcctatctagttgatgaagaaaatgagctatttgctaaatgtgctcctttcatcttgcag
 || || || |||||||||||||||||  || | || |||||||| ||| | ||||||||  ||||||| ||||| || ||||| || || ||| |||||||| |    |  |  ||  | | |  |   |   |||   | |  | |  |||  |  ||   |      | | |  | |    || |                                              
AGATGCACCGGATGTTGAGGAGGAGAATGTCTTCTCTAGACCTTCGGTTGGGTATGATGACATGTGGGCTAAAACTCTTTTAGAAACTTCAGAATTGGAGgtatactgctagcttaatctgtcttcag-ggctgtcatcaaaataacttaattctaggggtgttagaaaatgacttttgttgtatttacag-------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161714032|gb|FC064107.1|FC064107
EST:     GTTATGATGATTTGTGGGCCAAAACACTCTTAGAGACATCGGAAATGGAG                         GAAGATGATGCCAGGTCATCAGGGACATCTTCCCCAGAGTCAACGGGATCA
genomic: GTTATGATGATTTGTGGGCCAAAACACTCTTAGAGACATCGGAAATGGAGgtacaagttt ... catcttgcagGAAGATGATGCCAGGTCATCAGGGACATCTTCCCCAGAGTCAACGGGATCA