Sequence
atgc intronic sequence ATGC exonic sequenceTAAAGCGTGCATTAAGGATTGCCAATGCTGCTCAACAAATGGCCACCGTTGCACGGGGTAGCAGTGGACCGGTCATACTCTTTGTGGAGATACTGAACAAgtctgttgcttggatctttaccagattactcccttgttaattattttctcagttgtttgttttgcgttttacatgatgggtgtaagatttggatacattatgtttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g14680.t01 (Vitis vinifera), 5'ss of exon 21
lower sequence: GLYMA17G37870.1 (Glycine max), 5'ss of exon 22
-TAAAGCGTGCATTAAGGATTGCCAATGCTGCTCAACAAATGGCCACCGTTGCACGGGGTAGCAGTGGACCGGTCATACTCTTTGTGGAGATACTGAACAAgtctgttgcttggatctttaccagattactcccttgttaattattttctcagttgtttgttttgcgttttacatgatgggtgtaagatttggatacattatgtttcag
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CTTAAGCGTGCTTTAAGGATTGCAAATGCTGCTCAACAAATGGCCAATGCAGCAAGGGGTAGCAGTGGTCCAGTGACGCTCTTTGTTGAAATACTGAACAagttggtcacct-----tttgctataaaactacttgttatactatcttcatgattttcttacttacg--------gatgagagtgagtttca-----------------
upper sequence: Vv18s0001g14680.t01 (Vitis vinifera), 5'ss of exon 21
lower sequence: GLYMA14G40270.1 (Glycine max), 5'ss of exon 21
TAAAGCGTGCATTAAGGATTGCCAATGCTGCTCAACAAATGGCCACCGTTGCACGGGGTAGCAGTGGACCGGTCATACTCTTTGTGGAGATACTGAACAAgtctgttgcttggatctttaccagattactcccttgttaattattttctcagttgtttgttttgcgttttacatgatgggtgtaagatttggatacattatgtttcag
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TTAAGCGTGCTTTGAGGATTGCAAATGCTGCTCAACAAATGGCCAATGCAGCAAGGGGTAGCAGTGGTCCAGTGACGCTCTTTGTTGAAATACTGAACAAgttggttacct-----tttgctataaaactacttgttatactatcttcatgactttcttacttacggatgaga--gtgggttccag----------------------
upper sequence: Vv18s0001g14680.t01 (Vitis vinifera), 5'ss of exon 21
lower sequence: EFJ27365 (Selaginella moellendorffii), 5'ss of exon 19
TAAAGCGTGCATTAAGGATTGCCAATGCTGCTCAACAAATGGCCACCGTTGCACGGGGTAGCAGTGGACCGGTCATACTCTTTGTGGAGATACTGAACAAgtctgttgcttggatctttaccagattactcccttgttaatt-attttctcagttgtttgttttgcgttttacatgatgggtgtaagatttggatacattatgtttcag
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TAAAGCGAGCTCTCAGAATCGCCAATGCTGCTCAGCAAGTGTCCAGTGCAAGCAGGGGAAGCAGCGGACCAGTCACTCTCTTCGTTGAGATACTGAACAAgtctgtt----------ttgctagatttcgtttctttcgtttgaaacactaaactatttcatttcag------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110426908|gb|EC993335.1|EC993335EST: GGACCGGTCATACTCTTTGTGGAGATACTGAACAA GTACATTTANNNNNNNGAGAAGGGGAACTCACAGGTCACAAGTTCAGCAAT
genomic: GGACCGGTCATACTCTTTGTGGAGATACTGAACAAgtctgttgct ... tatgtttcagGTACATTTATTTTTTTGAGAAGGGGAACTCACAGGTCACAAGTTCAGCAAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TAAAGCGTGCATTAAGGATTGCCAATGCTGCTCAACAAATGGCCACCGTTGCACGGGGTAGCAGTGGACCGGTCATACTCTTTGTGGAGATACTGAACAAgtctgttgcttggatctttaccagattactcccttgttaattattttctcagttgtttgttttgcgttttacatgatgggtgtaagatttggatacattatgtttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT