Sequence
atgc intronic sequence ATGC exonic sequenceTGCACAAAGCAATTTAAGGGACCTACTTCTGCAATGCTGTATGGATGATGCTTCTGATGTTTGTCAAAGTGCTCTTGCCCTTCTTGGGGACCTTGCAAGAgtgagtttacacttcttaatctattcataggtagcattttctttatgcttccatgcagagtttgtcaatacattgttttatgatcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g00910.t01 (Vitis vinifera), 5'ss of exon 21
lower sequence: GRMZM2G376731_T01 (Zea mays), 5'ss of exon 21
TGCACAAAGCAATTTAAGGGACCTACTTCTGCAATGCTGTATGGATGATGCTTCTGATGTTTGTCAAAGTGCTCTTGCCCTTCTTGGGGACCTTGCAAGAgt-gagtttacacttct-taatctattcataggtagcattttctttatgcttccatgcagagtttgtcaatacattgttttatgatcag
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TGCACAGAGCAGTTTGAGAGATCTGCTTTTGCAATGCTGCATGGATGAAGCAGCTGATGTTCGACAAAGTGCCCTTGCCCTTCTTGGAGACCTTTCTAGGgttgactgcataccaccatagttcatattattttgacataattttcac---tctacaaaaaaaataactctttgttgtactag------
upper sequence: Vv18s0001g00910.t01 (Vitis vinifera), 5'ss of exon 21
lower sequence: GLYMA20G24040.1 (Glycine max), 5'ss of exon 21
TGCACAAAGCAATTTAAGGGACCTACTTCTGCAATGCTGTATGGATGATGCTTCTGATGTTTGTCAAAGTGCTCTTGCCCTTCTTGGGGACCTTGCAAGAgtgagt------ttacacttcttaatctattcatagg------tagcattttctttatgcttccatgcagagtttgtcaatacattgttttatgatcag--
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TGCACAATGTTCTTTGAGGGACCTACTTCTGCATTGTTGTGTGGATGATGCTCCTGATGTTAGACAAAGTGCCTTTGCCTTACTTGGAGACCTTGCGCGAgtaagttgcatgtaatactgcatacattatacctaagaccatgtagccattagttgttccttgcccctggtgtcttttgaaa-gtaaatccaccttttgaa
upper sequence: Vv18s0001g00910.t01 (Vitis vinifera), 5'ss of exon 21
lower sequence: GLYMA10G42960.1 (Glycine max), 5'ss of exon 21
TGCACAAAGCAATTTAAGGGACCTACTTCTGCAATGCTGTATGGATGATGCTTCTGATGTTTGTCAAAGTGCTCTTGCCCTTCTTGGGGACCTTGCAAGAgtgagtt---tacacttcttaatctatt-------------cataggtagcattttctttatgcttccatgcagagtttgtcaatacatt-gttttatgatcag
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TGCACAATGTTCTTTGAGGGACCTACTTCTGCATTGTTGTGTGGATGATGCTCCTGATGTAAGACAAAGTGCCTTTGCCTTACTTGGAGACCTTGCGCGAgtaagttgcatgtatacctgcatacattatacccaagcccacatagccataatttgttccttgcccctg-gtgtcttttgaaagtaaatccactttttgaa---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|294964682|gb|GW838485.1|GW838485EST: CTTCTGATGTTTGTCAAAGTGCTCTTGCCCTTCTTGGGGACCTTGCAAGA GCCTGTCCAGTTTATTTGCATCCGCGTCTCTCTGAATTCCTCAATGTTGCA
genomic: CTTCTGATGTTTGTCAAAGTGCTCTTGCCCTTCTTGGGGACCTTGCAAGAgtgagtttac ... ttatgatcagGCCTGTCCAGTTTATTTGCATCCGCGTCTCTCTGAATTCCTCAATGTTGCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGCACAAAGCAATTTAAGGGACCTACTTCTGCAATGCTGTATGGATGATGCTTCTGATGTTTGTCAAAGTGCTCTTGCCCTTCTTGGGGACCTTGCAAGAgtgagtttacacttcttaatctattcataggtagcattttctttatgcttccatgcagagtttgtcaatacattgttttatgatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA