Sequence
atgc intronic sequence ATGC exonic sequenceTACGTACATTGGATCAAAGCAATTTGAAAACTTTGATTGTCCTGGATGATGATCCAACTGGAACCCAGACTGTTCATGATATTGAAGTTTTAACGGAATGgtgagagtcctgcaacttgtttattttatgctttgcaagacaaatggtctgtacatttttatttatttttagtgggcctaatatgctttattgttctaca...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g02140.t01 (Vitis vinifera), 5'ss of exon 21
lower sequence: LOC_Os06g14740.1 (Oryza sativa), 5'ss of exon 23
---TACGTACATTGGATCAAAGCAATTTGAAAACTTTGATTGTCCTGGATGATGATCCAACTGGAACCCAGACTGTTCATGATATTGAAGTTTTAACGGAATGgtgaga---gtcctgcaacttgtttattttatgctttgcaagacaa-atggtctgtacatttttatttatttt-tagtgggcctaatatgctttatt----gttctaca--------------------------
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TTTCATCTGCATCTCATAATAGCAA---AAAAATTCTTGTGGTTTTGGATGATGATCCAACTGGAACCCAGACAGTTCATGATATAGAAGTTTTAACTGAATGgtaaaataaataatgggagatgtatattttgagcct-gtggcatagtattgactgaatagattgacgtactttgttactttgtaaaaatgttctgtgaacagtgccataagcctcacttggaaattaaactgcag
upper sequence: Vv17s0000g02140.t01 (Vitis vinifera), 5'ss of exon 21
lower sequence: GLYMA07G11610.1 (Glycine max), 5'ss of exon 19
TACGTACATTGGATCAAAGCAATTTGAAAACTTTGATTGTCCTGGATGATGATCCAACTGGAACCCAGACTGTTCATGATATTGAAGTTTTAACGGAATGgtgagagtcctgcaacttgtttattttatgct--ttgcaagacaaatggtctgtacatttttatttatttttagtgggcctaatatgctttattgttctaca
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TACAAACCCTAAAAGAAAGCAATTCAAAAATTTTAGTTGTTTTGGATGACGATCCGACAGGAACACAAACTGTTCATGATATTGAGGTATTAACAGAATGgtaagtttatttcattttctttgattatttctaatttctcggcagaatcaatgcaaatcatgtttcatacagtactatctcaaaccaaagtaccaaagca--
upper sequence: Vv17s0000g02140.t01 (Vitis vinifera), 5'ss of exon 21
lower sequence: AT1G18270.1 (Arabidopsis thaliana), 5'ss of exon 23
TACGTACATTGGATCAAAGCAATTTGAAAACTTTGATTGTCCTGGATGATGATCCAACTGGAACCCAGACTGTTCATGATATTGAAGTTTTAACGGAATGgtgagagtcctgcaacttgtt-tattttatgctttgcaagacaaatggtctgtacattt-ttatttatttttagtgggcctaatatgct--ttattgttctaca-----------------------------------------------------
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TACATAGACTAAATATGGGAAACTCGAAGACATTGGTTGTTCTTGATGATGATCCAACTGGCACACAAACTGTTCATGACGTAGAGGTTTTAACTGAATGgttag--ccttgcatctttctctatgaaaaactgaacttatcgtgtcaacaaaaaagatatcatgaatctttcactgaaataattggcaagtcgctagcctagaaactaatggaaggaattgataattgcttattgcttttccctacattttgacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161707308|gb|FC055152.1|FC055152EST: GATCC-ACTGGAACCCAGACTGTTCATGATATTGAAGTTTTAACGGAATG GAACGTCGAACCTCTTGTTGAACAATTCAGAAAAAGGCCCAAATGCTTCTT
genomic: GATCCAACTGGAACCCAGACTGTTCATGATATTGAAGTTTTAACGGAATGgtgagagtcc ... tctgttgcagGAACGTCGAACCTCTTGTTGAACAATTCAGAAAAAGGCCCAAATGCTTCTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TACGTACATTGGATCAAAGCAATTTGAAAACTTTGATTGTCCTGGATGATGATCCAACTGGAACCCAGACTGTTCATGATATTGAAGTTTTAACGGAATGgtgagagtcctgcaacttgtttattttatgctttgcaagacaaatggtctgtacatttttatttatttttagtgggcctaatatgctttattgttctaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagacaa