Sequence
atgc intronic sequence ATGC exonic sequenceGTTCTTGAATATCGAGGTGAACAAGTGAGGCGCAGTATTGCAGATATGAGGGAGGTGCGCTACCGATTAGAAGGAAAAGACTGCTATgtgagaatctttctctttctttgtgttctaaaaagaccaccaaaaacaaccaaaacttttacatttcctcatctttcttgagagcattaaaataaattgatattgttgtgtttgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0098g00350.t01 (Vitis vinifera), 5'ss of exon 21
lower sequence: GLYMA06G13330.1 (Glycine max), 5'ss of exon 21
GTTCTTGAATATCGAGGTGAACAAGTGAGGCGCAGTATTGCAGATATGAGGGAGGTGCGCTACCGATTAGAAGGAAAAGACTGCTATgtgagaatctttctctttctttgtgttctaaaaagaccaccaaaaacaaccaaaacttttacatttcctcatctttcttgagagcattaaaataaattgatattgttgtgtttgcag
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GTTCTTGAATATCGTGGTGAACAAGTGAGGCGCAGCATTGCAGATTTGAGGGAGGCACGCTATAGATTAGAAGGGAAAGACTGCTACgtgagttaattcccctatgtctgccttttaatggcac----actggtcatcatattatttatgtcatgttatcaacctaaaatgcccta-------------ctcttgtctttgcag
upper sequence: Vv16s0098g00350.t01 (Vitis vinifera), 5'ss of exon 21
lower sequence: GLYMA04G41500.1 (Glycine max), 5'ss of exon 21
GTTCTTGAATATCGAGGTGAACAAGTGAGGCGCAGTATTGCAGATATGAGGGAGGTGCGCTACCGATTAGAAGGAAAAGACTGCTATgtgagaatctttctctttctttgtgttctaaaaagaccaccaaaaacaaccaaaacttttacatttcctcatctttcttgagagcattaaaataaattgatattgttgtgtttgcag
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GTTCTTGAATATCGTGGTGAACAAGTGAGACGCAGCATTGCAGATTTGAGGGAGGCACGCTATAGATTAGAAGGGAAAGACTGCTACgtgagttaattcctctatgtctgcctattaacagcac-actggtcatcat-attatttatatgttatgttatcaacctaaaatgcccta-------------ctcttgtctttgcag
upper sequence: Vv16s0098g00350.t01 (Vitis vinifera), 5'ss of exon 21
lower sequence: GLYMA19G17460.2 (Glycine max), 5'ss of exon 12
GTTCTTGAATATCGAGGTGAACAAGTGAGGCGCAGTATTGCAGATATGAGGGAGGTGCGCTACCGATTAGAAGGAAAAGACTGCTATgtgagaatctttctctttctttgtgttctaaa---aagaccaccaaa---aacaaccaaaacttttacat---ttcctcatctttcttgagagcattaaaataaattgatattgttgtgtttgcag
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GTTCTTGAATATCGTGGTGAACAAGTGAGGCGGAGCATTGCAGATCTAAGGGAGGCACGCTATAGATTAGAAGGGAAAGACTGCTATgttagtcttctccccctcccatgttctttgtgtttgtggcctttagatttaaatgtcaaagcattgtcctggacttttccttttgtttgatgggatttcc--------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30133456|gb|CB918795.1|CB918795EST: TTGCAGATATGAGGGAGGTGCGCTACCGATTAGAAGGAAAAGACTGCTAT CTCTTTAAGATCAGTGAAGAAGTGGTAGTCGATGCTACAGATAAAGGAAAC
genomic: TTGCAGATATGAGGGAGGTGCGCTACCGATTAGAAGGAAAAGACTGCTATgtgagaatct ... gtgtttgcagCTCTTTAAGATCAGTGAAGAAGTGGTAGTCGATGCTACAGATAAAGGAAAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTCTTGAATATCGAGGTGAACAAGTGAGGCGCAGTATTGCAGATATGAGGGAGGTGCGCTACCGATTAGAAGGAAAAGACTGCTATgtgagaatctttctctttctttgtgttctaaaaagaccaccaaaaacaaccaaaacttttacatttcctcatctttcttgagagcattaaaataaattgatattgttgtgtttgcag
- - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA