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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATAGGGACATCCATCCGCCATGGTTGCAGTAGCGTTGTGAATCTAGAGCTTCTCCCTCAGCCACCACAGACCCGGGCTCCCGGCAACCCATGGCCACAGgttcaactcataaccctctccctctccctctccctctccctgttcacgttgctaaaatgctcttctactttaaatctatcgttactgcaagtggatgtataccttgcttagaccagtagcctgcaatgtgttgtttgcaagtctcggataatctaggtgttttattctcttaacttctggattgcag

Basic information

species Vitis vinifera
transcript Vv16s0098g00290.t01
intron # 21
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0098g00290.t01 (Vitis vinifera), 5'ss of exon 21
lower sequence: GLYMA04G41540.1 (Glycine max), 5'ss of exon 21
CATAGGGACATCCATCCGCCATGGTTGCAGTAGCGTTGTGAATCTAGAGCTTCTCCCTCAGCCACCACAGACCCGGGCTCCCGGCAACCCATGGCCACAGgttcaactcataaccctctccctctccctctccctctccctgttcacgttgctaaaatgctcttctactttaaatctatcgttactgcaagtggatgtataccttgcttagaccagtagcctgcaatgtgttgtttgcaagtctcggataatctaggtgttttattctcttaacttctggattgcag
||||||||||||||| || ||||| || |||||| |||| ||||| || |||||||||||||||||||| ||  |||| || |||||||| ||||||||||||  |  | |           | |||      ||     |||| |   |   | |    |  || |     |||  |  | |   | || ||||  | |  |||||    ||                                                                          
CATAGGGACATCCATTCGGCATGGGTGTAGTAGCATTGTAAATCTGGAACTTCTCCCTCAGCCACCACAAACTAGGGCCCCAGGCAACCCTTGGCCACAGgttagatccgttgg--------tttccgaaatactagttgtgtttattctttcagaccatttgtcaa-----aatagacagcttgagaaattggacatttcgcttgccattac--------------------------------------------------------------------------

upper sequence: Vv16s0098g00290.t01 (Vitis vinifera), 5'ss of exon 21
lower sequence: GLYMA06G13280.1 (Glycine max), 5'ss of exon 22
CATAGGGACATCCATCCGCCATGGTTGCAGTAGCGTTGTGAATCTAGAGCTTCTCCCTCAGCCACCACAGACCCGGGCTCCCGGCAACCCATGGCCACAGgttcaactcataaccctctccctctccctctccctctccctgttcacgttgctaaaatgctcttctactttaaatctatcgttactgcaagtggatgtataccttgcttagaccagtagcctgcaatgtgttgtttgcaagtctcggataatctaggtgttttattctcttaacttctggattgcag
||||||||||||||| || ||||| || |||||| |||| ||||| || |||||||||||||||||||| ||  | || || |||||||| ||||||||||||  |  |||           | |||       |     ||||     |   | |    |  || |      ||  |  | |   | || ||||  | |  |||||    ||                                                                          
CATAGGGACATCCATTCGGCATGGGTGTAGTAGCATTGTAAATCTGGAACTTCTCCCTCAGCCACCACAAACTAGAGCCCCAGGCAACCCTTGGCCACAGgttagatccattgg--------tttccgaaatattagttgtgtttgttctttcagaccatttgtcaat-----atagactgcttgagaaattggacatttggcttgccattac--------------------------------------------------------------------------

upper sequence: Vv16s0098g00290.t01 (Vitis vinifera), 5'ss of exon 21
lower sequence: GLYMA19G16450.1 (Glycine max), 5'ss of exon 17
CATAGGGACATCCATCCGCCATGGTTGCAGTAGCGTTGTGAATCTAGAGCTTCTCCCTCAGCCACCACAGACCCGGGCTCCCGGCAACCCATGGCCACAGgttcaactcataaccctctccctctccctctccctctccctgttcacgttgctaaaatgctcttctactttaaatctatcgttactgcaagtggatgtataccttgcttagaccagtagcctgcaatgtgttgtttgcaagtctcggataatctaggtgttttattctcttaacttctggattgcag
|||||| || ||||| || |||||||| ||||||||||| ||||| || || || |||||||||||||  ||  ||||||| |||||||||||||| ||||||  | |   | |  |          ||||   | |   | |||       || |   |    |||    ||||    |  |  |  || |    |||     ||  || || | |    |   ||   |||||    |  || || |  |  |     ||||  |   |   ||| ||| |||||
CATAGGAACGTCCATTCGTCATGGTTGTAGTAGCGTTGTAAATCTTGAACTCCTTCCTCAGCCACCACCAACTAGGGCTCCTGGCAACCCATGGCCTCAGgttagatttgaatcattagttaaaagtctctgt-tatgtatcttcttagcagtagacaac----ctaagagaaattgggcactttt--aattactagtaa----tggctaaacaattgttttcatattaattgttcttga--cttgggtggttgaa----tttaaccaaatg-tttccggaatgcag

upper sequence: Vv16s0098g00290.t01 (Vitis vinifera), 5'ss of exon 21
lower sequence: GLYMA14G32500.1 (Glycine max), 5'ss of exon 22
CATAGGGACATCCATCCGCCATGGTTGCAGTAGCGTTGTGAATCTAGAGCTTCTCCCTCAGCCACCACAGACCCGGGCTCCCGGCAACCCATGGCCACAGgttcaactcataaccctctccctctccctctcc-ctctccctgttcacgttgctaaaatgctcttct--acttt-aaatctatcgttactgcaagtggatgtataccttgcttagaccagtagcctgcaatgtgttgtttgcaagtctcggataatctaggtgttttattctcttaacttctggattgcag
|||||| |||||||| || |||||||| ||||||||||| ||||| || || || |||||||||||||  ||  |||||||| |||| |||||||| ||||||  | |   | |  |     |     ||||   | |   | |||       || |   | |      ||||  | |  | |  |||||   | ||| |  | |  ||  ||     ||||          |||| ||     | || |  |  |  ||    ||||  |   |   ||||||| |||||
CATAGGAACATCCATTCGTCATGGTTGTAGTAGCGTTGTAAATCTTGAACTCCTTCCTCAGCCACCACCAACTAGGGCTCCCAGCAATCCATGGCCTCAGgttagatttgaatcattagttttgaaagtctctgttatgtatcttcttagcaatagacaacccgagagaacttggagacttgtaattactagtaatggctcaacaatttatttca--tagtaat--------tgttctt-----gacttgagtggttgag----tttaaccaaatg-tttctggaatgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110395579|gb|EC961246.1|EC961246
EST:     TCTCCCTCAGCCACCACAGACCCGGGCTCCCGGCAACCCATGGCCACAG                         TGGCCTCGCATATTCCGTGTGGACTATGGACACCAGGAAGCTGCTGCCAAG
genomic: TCTCCCTCAGCCACCACAGACCCGGGCTCCCGGCAACCCATGGCCACAGgttcaactca ... tggattgcagTGGCCTCGCATATTCCGTGTGGACTATGGACACCAGGAAGCTGCTGCCAAG