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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACGAATTCCATATCGGCCTATTGAGGCTAAGCTTAGAGCTCTTCCAACAGATCGTGATAAACTACCCTCAGGCAAACAGATTCTAGCATTGACATTAACgtccgttccaatgttaacttttgtttggttttcctggtccatttttactgaactgcaaagtattatcttagccattcttgctctgctggttctgcag

Basic information

species Vitis vinifera
transcript Vv16s0050g00490.t01
intron # 21
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0050g00490.t01 (Vitis vinifera), 5'ss of exon 21
lower sequence: GLYMA10G37900.1 (Glycine max), 5'ss of exon 21
TACGAATTCCATATCGGCCTATTGAGGCTAAGCTTAGAGCTCTTCCAACAGATCGTGATAAACTACCCTCAGGCAAACAGATTCTAGCATTGACATTAACgtccgttccaatgttaacttttgtttggttttcctggtccatttttactgaactgcaaagtattatcttagccattcttgctctgctggttctgcag
|| |  | |||||||| || || || |||||| ||||  | ||| |||  |||||||| ||||| ||||| || |||||||| ||||||||||| |||||||  ||   |||  ||| ||   ||   | | | |     || ||| |         || | |||  | | |  ||||   | | ||| ||      
TAAGGGTCCCATATCGACCAATAGATGCTAAGATTAGTTCACTTTCAAGTGATCGTGACAAACTCCCCTCTGGAAAACAGATACTAGCATTGACGTTAACgttagt---aattataaattccatt--atctgcttacattatctttgc---------aacttttagatgatctgttctcagtattctgatttcag--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110356805|gb|EC919900.1|EC919900
EST:     GATCGTGATAAACTACCCTCAGGCAAACAGATTCTAGCATTGACATTAAC                         TTACAAGTTCAAATTGGAAGATGGAGCTGAAATAAAACCTCAAATTCCATT
genomic: GATCGTGATAAACTACCCTCAGGCAAACAGATTCTAGCATTGACATTAACgtccgttcca ... ggttctgcagTTACAAGTTCAAATTGGAAGATGGAGCTGAAATAAAACCTCAAATTCCATT
EST: gi|30305348|gb|CB982142.1|CB982142
EST:     GATCGTGATAAACTACCCTCAGGCAAACAGATTCTAGCATTGACATTAAC                         TTACAAGTTCAAATTGGAAGATGGAGCTGAAATAAAACCTCAAATTCCATT
genomic: GATCGTGATAAACTACCCTCAGGCAAACAGATTCTAGCATTGACATTAACgtccgttcca ... ggttctgcagTTACAAGTTCAAATTGGAAGATGGAGCTGAAATAAAACCTCAAATTCCATT
EST: gi|110358933|gb|EC919587.1|EC919587
EST:     GATCGTGATAAACTACCCTCAGGCAAACAGATTCTAGCATTGACATTAAC                         TTACAAGTTCAAATTGGAAGATGGAGCTGAAATAAAACCTCAAATTCCATT
genomic: GATCGTGATAAACTACCCTCAGGCAAACAGATTCTAGCATTGACATTAACgtccgttcca ... ggttctgcagTTACAAGTTCAAATTGGAAGATGGAGCTGAAATAAAACCTCAAATTCCATT