Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTTAACAGTGGAGACATATCTAAAAATGCTGCTGATAAGCTTGTTCAGCTCTGCCAGGCTTTAGACAATGGTGATTTCGGCACTGCCTTACAAATTCAGgtatatttctggggattaaaatattcaacttaggcaactccaaatgagaaatgacattgtatttggtctttttttattcttcctgggatag

Basic information

species Vitis vinifera
transcript Vv13s0158g00140.t01
intron # 21
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0158g00140.t01 (Vitis vinifera), 5'ss of exon 21
lower sequence: GLYMA09G36050.2 (Glycine max), 5'ss of exon 21
ACTTAACAGTGGAGACATATCTAAAAATGCTGCTGATAAGCTTGTTCAGCTCTGCCAGGCTTTAGACAATGGTGATTTCGGCACTGCCTTACAAATTCAGgtatatttctggggattaaaatattcaacttaggcaactccaaatgagaaatgacattgtatttggtctttttttattcttcctgggatag---
  | || |||||||||||||| ||||||||| ||||||||||  ||||||| || ||||| ||||||||||||||||| || |||||| |||||||||||||| ||   | |  | |  ||  |  |   |   |   |  ||||   ||    |||   || |    | |   | || || ||||  | |   
GTTAAATAGTGGAGACATATCAAAAAATGCTTCTGATAAGCTCCTTCAGCTTTGTCAGGCATTAGACAATGGTGATTTTGGTACTGCCCTACAAATTCAGgtaaatcaattgcaaatgcaaattatagtatttacctgtgtaaat---aacctgcatcaaatctacattctagctgtt-ttactggtgttgcag

upper sequence: Vv13s0158g00140.t01 (Vitis vinifera), 5'ss of exon 21
lower sequence: GLYMA12G01290.1 (Glycine max), 5'ss of exon 21
ACTTAACAGTGGAGACATATCTAAAAATGCTGCTGATAAGCTTGTTCAGCTCTGCCAGGCTTTAGACAATGGTGATTTCGGCACTGCCTTACAAATTCAGgtatatttctggggatt--aaaatattcaacttaggcaactccaaatgagaaatgacattgtatt-tggtctttttttattcttcctgggatag
  | || |||||||||||||| ||||||||| |||| |||||  ||||||| || ||||| ||||||||||||||||| || |||||| |||||||||||||| ||   | |  | |  ||| |||   | |||      |  |||     |   |   |  ||| | | || ||||| || ||| ||    ||
GTTAAATAGTGGAGACATATCGAAAAATGCTTCTGACAAGCTCCTTCAGCTTTGTCAGGCATTAGACAATGGTGATTTTGGTACTGCCCTACAAATTCAGgtaaatcaattgcaaatgcaaattatagtatttacctgtgtaaaaaactccatcaaatctacattctagcctctttttttttttcgtgttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110373153|gb|EC937367.1|EC937367
EST:     TCTGCCAGGCTTTAGACAATGGTGATTTCGGCACTGCCTTACAAATTCAG                         GTACTTCTTACGACCAGTGAGTGGGATGAGTGCAACTTCTGGCTAGCAACA
genomic: TCTGCCAGGCTTTAGACAATGGTGATTTCGGCACTGCCTTACAAATTCAGgtatatttct ... cctgggatagGTACTTCTTACGACCAGTGAGTGGGATGAGTGCAACTTCTGGCTAGCAACA
EST: gi|71884642|gb|DT033697.1|DT033697
EST:     TCTGCCAGGCTTTAGACAATGGTGATTTCGGCACTGCCTTACAAATTCAG                         GTACTTCTTACGACCAGTGAGTGGGATGAGTGCAACTTCTGGCTAGCAACA
genomic: TCTGCCAGGCTTTAGACAATGGTGATTTCGGCACTGCCTTACAAATTCAGgtatatttct ... cctgggatagGTACTTCTTACGACCAGTGAGTGGGATGAGTGCAACTTCTGGCTAGCAACA
EST: gi|71886835|gb|DT035890.1|DT035890
EST:     TCTGCCAGGCTTTAGACAATGGTGATTTCGGCACTGCCTTACAAATTCAG                         GTACTTCTTACGACCAGTGAGTGGGATGAGTGCAACTTCTGGCTAGCAACA
genomic: TCTGCCAGGCTTTAGACAATGGTGATTTCGGCACTGCCTTACAAATTCAGgtatatttct ... cctgggatagGTACTTCTTACGACCAGTGAGTGGGATGAGTGCAACTTCTGGCTAGCAACA