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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTAACCTTGTGAAATTGTATGGGTGCTGCATTGAAGGAGTAAACCGATCACTTGTCTATGAGTATCTTGAAAACAAGAGCCTTGATCAAGCACTATTTGgtaagagttagcaccttagcagctctagctatcgtgacattttcttaagaaaacaaaatgaatacagttatggttgttattcatgaacag

Basic information

species Vitis vinifera
transcript Vv12s0055g00580.t01
intron # 21
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0055g00580.t01 (Vitis vinifera), 5'ss of exon 21
lower sequence: GLYMA09G15200.1 (Glycine max), 5'ss of exon 20
CGTAACCTTGTGAAATTGTATGGGTGCTGCATTGAAGGAGTAAACCGATCACTTGTCTATGAGTATCTTGAAAACAAGAGCCTTGATCAAGCACTATTTGgtaagagttagcaccttagcagctctagctatcgtgacattttcttaagaaaacaaaatgaatacagttatggtt-gttattcatgaacag---------
||||| ||||| || || ||||| || ||||||||||||   ||  ||    | |||||||||||||||||||||||||| |||||||| ||| ||||||||| || | |     ||      |||   |||    | || |   ||   | | | |   ||| |   || ||||  ||||     |||           
CGTAATCTTGTTAACTTATATGGATGTTGCATTGAAGGAAATAAAAGACTTTTGGTCTATGAGTATCTTGAAAACAAGAGTCTTGATCATGCAATATTTGgtatgattgatgttattttatattctgtgtatatatatatatatatatatatatatagcaaatgcttgtaaggtttattatgtgcaaaccattatttttt

upper sequence: Vv12s0055g00580.t01 (Vitis vinifera), 5'ss of exon 21
lower sequence: GLYMA08G25590.1 (Glycine max), 5'ss of exon 23
CGTAACCTTGTGAAATTGTATGGGTGCTGCATTGAAGGAGTAAACCGATCACTTGTCTATGAGTATCTTGAAAACAAGAGCCTTGATCAAGCACTATTTGgtaagag------------------ttagcaccttagca-----gctctagctatcgtgacattttc-ttaagaaaacaaaatgaatacagttatggttgttattcatgaacag
||||| || || ||||| ||||| || |||||||| ||    ||  ||   ||||||||||||||||| ||||| ||||| |||||||||||| | ||||||| |||                  | ||    |  | |     |||       |  |  ||||||| ||   | ||  || | |  ||| || |||||  | ||  ||  |||
CGTAATCTGGTCAAATTATATGGATGTTGCATTGAGGGGAGTAAAAGACTGCTTGTCTATGAGTATCTAGAAAATAAGAGTCTTGATCAAGCATTGTTTGgtatgagaaaatgatactttttttttcagtgtatatgtatgaatgcttatttgtttttctcattttcatttgtataaataactaaggacaattgtggtt--tgttt-tgggcag

upper sequence: Vv12s0055g00580.t01 (Vitis vinifera), 5'ss of exon 21
lower sequence: GLYMA08G25600.1 (Glycine max), 5'ss of exon 20
CGTAACCTTGTGAAATTGTATGGGTGCTGCATTGAAGGAGTAAACCGATCACTTGTCTATGAGTATCTTGAAAACAAGAGCCTTGATCAAGCACTATTTGgtaagagt---tagcaccttagcagctctagctat-cgtga------------------cattttc-ttaagaaaacaaaatgaatacagttatggttgttattcatgaacag
||||| || || ||||| ||||| || |||||||| ||    ||  ||   ||||||||||| ||||| ||||| ||||| |||||||||||| | ||||||| |||    |   || ||     |  |   |||   |||                  ||||||| ||   | ||  || | |  ||| || |||||  | ||  ||  |||
CGTAATCTGGTCAAATTATATGGATGTTGCATTGAGGGGAGTAAAAGACTGCTTGTCTATGAATATCTAGAAAATAAGAGTCTTGATCAAGCATTGTTTGgtatgagaaaatgatacttttttttcagtgtatatgtatgaatgcttatttgtttttctcattttcatttgtataaataactaaggacaattgtggtt--tgttt-tgggcag