Sequence
atgc intronic sequence ATGC exonic sequenceTTGGGGATGAAGTTTGATGTAATAAGAGAAGAATCCTCAATTCTCCATGTTTTCCCTTTCAACTCAGAGAAAAAGAGAGGTGGTGTTGCAGTACAGgtaattgatatgtttccatggtcttaatgctatgactttgttgacagaagttccaaaaacctgttggacataattttgtgtaagttgaaaacataggatt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0018g02130.t01 (Vitis vinifera), 5'ss of exon 21
lower sequence: LOC_Os04g51610.3 (Oryza sativa), 5'ss of exon 20
TTGGGGATGAAGTTTGATGTAATAAGAGAAGAATCCTCAATTCTCCATGTTTTCCCTTTCAACTCAGAGAAAAAGAGAGGTGGTGTTGCAGTACA---Ggtaattgatatgtttccatggtcttaatgctatgactttgttgacagaagttccaaaaacctgttggacataattttgtgtaagttgaaaacatag--gatt-
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CTTGGCATGAGATTCAATGACACAAGAACAAAGTCCTCTATTCTTCATGTTTTCCCATTCAACTCAGAGAAAAAAAGAGGCGGGGTTGCAGTGCATCTGgtaattcata-atatctgcaactttgacag-accccttcccctattttttttcttattgtgtatggtacattaccatgta-aaatggcatgcctagtcaacta
upper sequence: Vv09s0018g02130.t01 (Vitis vinifera), 5'ss of exon 21
lower sequence: GRMZM2G140328_T03 (Zea mays), 5'ss of exon 20
TTGGGGATGAAGTTTGATGTAATAAGAGAAGAATCCTCAATTCTCCATGTTTTCCCTTTCAACTCAGAGAAAAAGAGAGGTGGTGTTGCAGTACA---Ggtaattgatatgtttccatggtctta---atgctatga------ctttgttgacagaagttccaaaaacctgttggacataattttgtgtaagttgaaaacataggatt
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CTGGGTATGAAATTCAATGAAACAAGATTGAAGTCATCTATTCTTCATGTATTTCCTTTCAACTCAGAGAAAAAGCGAGGTGGGGTTGCAGTGCACCTGgtaatttgaat-tatctgcaaccctgaagatgttgtgtgatatctcttgaagacctaagtcataacgttgtgctagatcctctcttttttaccct-accaca-------
upper sequence: Vv09s0018g02130.t01 (Vitis vinifera), 5'ss of exon 21
lower sequence: GRMZM2G391042_T02 (Zea mays), 5'ss of exon 20
TTGGGGATGAAGTTTGATGTAATAAGAGAAGAATCCTCAATTCTCCATGTTTTCCCTTTCAACTCAGAGAAAAAGAGAGGTGGTGTTGCAGTACA---Ggtaattgatatgtttccatggtcttaatgctatgactttgttgacagaagttccaaaaacctgttggacataatt-ttgtgtaagttgaaaacataggatt
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CTGGGTATGAAATTCAGTGAAACAAGATCGAAGTCATCTATTCTTCATGTATTTCCTTTCAACTCAGAGAAAAAGCGAGGCGGGGTTGCGGTGTACCTGgtaatttgaattatccgcaacacaagatgctgtg-tgatgtcttttgaagatctaagttggttgtgatttgagtcgtaatgttgtgctgcatcatctattt
upper sequence: Vv09s0018g02130.t01 (Vitis vinifera), 5'ss of exon 21
lower sequence: GLYMA07G00630.1 (Glycine max), 5'ss of exon 22
TTGGGGATGAAGTTTGATGTAATAAGAGAAGAATCCTCAATTCTCCATGTTTTCCCTTTCAACTCAGAGAAAAAGAGAGGTGGTGTTGCAGTACAGgtaattgatatgtttccatggt-cttaatgctatgacttt--gttgacag-aagttccaaaaacctgttggacataattttgtgtaagttgaaaacataggatt
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TTGGGTATGGATTTTGATGTTATAAGATCAAATTCAACAGTTCTCCATGTCTTCCCCTTCAATTCTGAGAAAAAGAGAGGTGGTGTTGCTTTGAAGCTGgtaatcatttgataaaaacatttactgatgcatcctttcatttagagcaatctgtgaactagtacgagacatgtattcatccttgtttcaattattaact-
upper sequence: Vv09s0018g02130.t01 (Vitis vinifera), 5'ss of exon 21
lower sequence: GLYMA08G23760.1 (Glycine max), 5'ss of exon 22
TTGGGGATGAAGTTTGATGTAATAAGAGAAGAATCCTCAATTCTCCATGTTTTCCCTTTCAACTCAGAGAAAAAGAGAGGTGGTGTTGCAGTACAGgtaat--tgatatgtttccatggtcttaatgctatgac--tttgttgacag-aagttccaaaaacctgttggacataattttgtgtaagttgaaaacataggatt
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TTGGGTATGAATTTTGATGTTATAAGATCAAATTCAACAGTTCTCCATGTCTTCCCCTTCAATTCTGAGAAAAAGCGAGGTGGTGTTGCTTTGAAGCTGgtaatcatttgataaaaaatatttactgatgcatcctttcatttagagcaatctgtgaactagtacgagacatatattcatccatgtttcaattcttaac--
upper sequence: Vv09s0018g02130.t01 (Vitis vinifera), 5'ss of exon 21
lower sequence: AT3G21180.1 (Arabidopsis thaliana), 5'ss of exon 19
TTGGGGATGAAGTTTGATGTAATAAGAGAAGAATCCTCAATTCTCCATGTTTTCCCTTTCAACTCAGAGAAAAAGAGAGGTGGTGTTGCAGTAC---AGgtaattgatatgt---ttccatggtcttaatgc-tatgactttgttgac-----agaagttcca---aaaacctgttggacataatt-ttgtgtaa-gttgaaaacataggatt--------------------------------------------------------
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TTGGGGATGAAGTTTGATACCATCAGGTCGGAGTCTGCTATCATCCATGCCTTCCCTTTCAATTCAGAGAAAAAGCGTGGTGGTGTTGCTGTGCTTCGAgtaatttctttatcctttctccaatttcaaaatacataaccttttttactttggagtcattacagttagcggctgcttcagttaaccgctatgttctgctgaattttcagtaactaaacacataaacatcttctcgtgaagctgattatgtgtatgttaattcactgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71864361|gb|DT013416.1|DT013416EST: ATGTTTTCCCTTTCAACTCAGAGAAAAAGAGAGGTGGTGTTGCAGTACAG GGTGACAATAAAGTTCATATACATTGGAAGGGAGCAGCTGAGATGGTACTA
genomic: ATGTTTTCCCTTTCAACTCAGAGAAAAAGAGAGGTGGTGTTGCAGTACAGgtaattgata ... attgtcgcagGGTGACAATAAAGTTCATATACATTGGAAGGGAGCAGCTGAGATGGTACTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTGGGGATGAAGTTTGATGTAATAAGAGAAGAATCCTCAATTCTCCATGTTTTCCCTTTCAACTCAGAGAAAAAGAGAGGTGGTGTTGCAGTACAGgtaattgatatgtttccatggtcttaatgctatgactttgttgacagaagttccaaaaacctgttggacataattttgtgtaagttgaaaacataggatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gacagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaca