1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' |
TGCAGCAACATTTCTTGCTTTCCATCCTCAAGATAACAATATTATTGCTATCGGGATGGATGATTCTACAATCCAGATATATAACGTCCGCGTAGATGAGgtagagtacagttaatgggtagttgtcatacatcccatatgttaacaagcaagacttcttatttggataccattttcttgatgcag
species | Vitis vinifera |
transcript | Vv09s0002g08370.t01 |
intron # | 21 |
splice site | 5' |
intron type | U2 |
EST: CCAGATATATAACGTCCGCGTAGATGAG GTTAAAAGCAAGCTTAAAGGCCACTCTAAGAGAACAACTGGCCTTGCCTTCEST: gi|351031457|gb|FQ446660.1|FQ446660
genomic: CCAGATATATAACGTCCGCGTAGATGAGgtagagtaca ... cttgatgcagGTTAAAAGCAAGCTTAAAGGCCACTCTAAGAGAATAACTGGCCTTGCCTTC
EST: CCAGATATATAACGTCCGCGTAGATGAG GTTAAAAGCAAGCTTAAAGGCCACTCTAAGAGAATAACTGGCCTTGCCTTCEST: gi|161717398|gb|FC068869.1|FC068869
genomic: CCAGATATATAACGTCCGCGTAGATGAGgtagagtaca ... cttgatgcagGTTAAAAGCAAGCTTAAAGGCCACTCTAAGAGAATAACTGGCCTTGCCTTC
EST: TCGGGATGGATGATTCTACAATCCAGATATATAACGTCCGCGTAGATGAT GTTAAAAGCAAGCTTAAAGGCCACTCTAAGAGAATAACTGGCCTTGCCTTCEST: gi|349813140|gb|FQ411380.1|FQ411380
genomic: TCGGGATGGATGATTCTACAATCCAGATATATAACGTCCGCGTAGATGAGgtagagtaca ... cttgatgcagGTTAAAAGCAAGCTTAAAGGCCACTCTAAGAGAATAACTGGCCTTGCCTTC
EST: CCAGATATATAACGTCCGCGTAGATGAG GTTAAAAGCAAGCTTAAAGGCCACTCTAAGAGAACAACTGGCCTTGCCTTCEST: gi|349829095|gb|FQ419627.1|FQ419627
genomic: CCAGATATATAACGTCCGCGTAGATGAGgtagagtaca ... cttgatgcagGTTAAAAGCAAGCTTAAAGGCCACTCTAAGAGAATAACTGGCCTTGCCTTC
EST: CCAGATATATAACGTCCGCGTAGATGAG GTTAAAAGCAAGCTTAAAGGCCACTCTAAGAGAATAACTGGCCTTGCCTTCEST: gi|349826376|gb|FQ417873.1|FQ417873
genomic: CCAGATATATAACGTCCGCGTAGATGAGgtagagtaca ... cttgatgcagGTTAAAAGCAAGCTTAAAGGCCACTCTAAGAGAATAACTGGCCTTGCCTTC
EST: CCAGATATATAACGTCCGCGTAGATGAG GTTAAAAGCAAGCTTAAAGGCCACTCTAAGAGAATAACTGGCCTTGCCTTCEST: gi|71861049|gb|DT010104.1|DT010104
genomic: CCAGATATATAACGTCCGCGTAGATGAGgtagagtaca ... cttgatgcagGTTAAAAGCAAGCTTAAAGGCCACTCTAAGAGAATAACTGGCCTTGCCTTC
EST: TCGGGATGGATGATTCTACAATCCAGATATATAACGTCCGCGTAGATGAG GTTAAAAGCAAGCTTAAAGGCCACTCTAAGAGAATAACTGGCCTTGCCTTCEST: gi|71860540|gb|DT009595.1|DT009595
genomic: TCGGGATGGATGATTCTACAATCCAGATATATAACGTCCGCGTAGATGAGgtagagtaca ... cttgatgcagGTTAAAAGCAAGCTTAAAGGCCACTCTAAGAGAATAACTGGCCTTGCCTTC
EST: TCGGGATGGATGATTCTACAATCCAGATATATAACGTCCGCGTAGATGAG GTTAAAAGCAAGCTTAAAGGCCACTCTAAGAGAATAACTGGCCTTGCCTTCEST: gi|351048584|gb|FQ448858.1|FQ448858
genomic: TCGGGATGGATGATTCTACAATCCAGATATATAACGTCCGCGTAGATGAGgtagagtaca ... cttgatgcagGTTAAAAGCAAGCTTAAAGGCCACTCTAAGAGAATAACTGGCCTTGCCTTC
EST: CCAGATATATAACGTCCGCGTAGATGAG GTTAAAAGCAAGCTTAAAGGCCACTCTAAGAGAATAACTGGCCTTGCCTCC
genomic: CCAGATATATAACGTCCGCGTAGATGAGgtagagtaca ... cttgatgcagGTTAAAAGCAAGCTTAAAGGCCACTCTAAGAGAATAACTGGCCTTGCCTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCAGCAACATTTCTTGCTTTCCATCCTCAAGATAACAATATTATTGCTATCGGGATGGATGATTCTACAATCCAGATATATAACGTCCGCGTAGATGAGgtagagtacagttaatgggtagttgtcatacatcccatatgttaacaagcaagacttcttatttggataccattttcttgatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA