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GGACATCATTTGCTTCCAGAAATCTGCTCCTCCTGAAAGTGAAGAACAATGCCGGTATTCTGATGTCACTTCATTTTTGGAATATGTGCAAAATCGTCAGgtacaatatggtgaaactttagtaaatattgcttaaggttcactaaggtttttggtctgtaagataattaagtgcagtttcaaaggattgctactgtgaa...
species | Vitis vinifera |
transcript | Vv08s0032g00600.t01 |
intron # | 21 |
splice site | 5' |
intron type | U2 |
EST: GCCGGTATTCTGATGTCACTTCATTTTTGGAATATGTGCAAAATCGTCAG GTTGTGCATTTTCGAGCTTTGGAGAGACCTAAGGAGGATGATTTCTGTCTAEST: gi|56409497|gb|CX017749.1|CX017749
genomic: GCCGGTATTCTGATGTCACTTCATTTTTGGAATATGTGCAAAATCGTCAGgtacaatatg ... tgccttttagGTTGTGCATTTTCGAGCTTTGGAGAGACCTAAGGAGGATGATTTCTGTCTA
EST: GCCGGTATTCTGATGTCACTTCATTTTTGGAATATGTGCAAAATCGTCAG GTTGTGCATTTTCGAGCTTTGGAGAGACCTAAGGAGGATGATTTCTGTCTAEST: gi|110719328|gb|EE097177.1|EE097177
genomic: GCCGGTATTCTGATGTCACTTCATTTTTGGAATATGTGCAAAATCGTCAGgtacaatatg ... tgccttttagGTTGTGCATTTTCGAGCTTTGGAGAGACCTAAGGAGGATGATTTCTGTCTA
EST: GCCGGTATTCTGATGTCACTTCATTTTTGGAATATGTGCAAAATCGTCAG GTTGTGCATTTTCGAGCTTTGGAGAGACCTAAGGAGGATGATTTCTGTCTAEST: gi|34542378|gb|CF510610.1|CF510610
genomic: GCCGGTATTCTGATGTCACTTCATTTTTGGAATATGTGCAAAATCGTCAGgtacaatatg ... tgccttttagGTTGTGCATTTTCGAGCTTTGGAGAGACCTAAGGAGGATGATTTCTGTCTA
EST: GCCGGTATTCTGATGTCACTTCATTTTTGGAATATGTGCAAAATCGTCAG GTTGTGCATTTTCGAGCTTTGGAGAGACCTAAGGAGGATGATTTCTGTCTAEST: gi|56409712|gb|CX017964.1|CX017964
genomic: GCCGGTATTCTGATGTCACTTCATTTTTGGAATATGTGCAAAATCGTCAGgtacaatatg ... tgccttttagGTTGTGCATTTTCGAGCTTTGGAGAGACCTAAGGAGGATGATTTCTGTCTA
EST: GCCGGTATTCTGATGTCACTTCATTTTTGGAATATGTGCAAAATCGTCAG GTTGTGCATTTTCGAGCTTTGGAGAGACCTAAGGAGGATGATTTCTGTCTA
genomic: GCCGGTATTCTGATGTCACTTCATTTTTGGAATATGTGCAAAATCGTCAGgtacaatatg ... tgccttttagGTTGTGCATTTTCGAGCTTTGGAGAGACCTAAGGAGGATGATTTCTGTCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGACATCATTTGCTTCCAGAAATCTGCTCCTCCTGAAAGTGAAGAACAATGCCGGTATTCTGATGTCACTTCATTTTTGGAATATGTGCAAAATCGTCAGgtacaatatggtgaaactttagtaaatattgcttaaggttcactaaggtttttggtctgtaagataattaagtgcagtttcaaaggattgctactgtgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaagga