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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGACATTGGCACTGAAGCTGGTCAAAGTACATTCAGTTATGATCAACTCAAGGCTAAATCCGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAGgttggttcaactttaaatatgactatttcgttttaaattcctcatgtttttatttgcaatttcaaaaaaatttccctttgcattcgcag

Basic information

species Vitis vinifera
transcript Vv08s0007g08690.t01
intron # 21
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349807848|gb|FQ402239.1|FQ402239
EST:     AGGCTAAATCTGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAG                         GCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
genomic: AGGCTAAATCCGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAGgttggttcaa ... gcattcgcagGCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
EST: gi|30297876|gb|CB974670.1|CB974670
EST:     AGGCTAAATCTGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAG                         GCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
genomic: AGGCTAAATCCGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAGgttggttcaa ... gcattcgcagGCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
EST: gi|33406439|gb|CF212066.1|CF212066
EST:     AGGCTAAATCTGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAG                         GCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
genomic: AGGCTAAATCCGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAGgttggttcaa ... gcattcgcagGCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
EST: gi|349819933|gb|FQ404655.1|FQ404655
EST:     AGGCTAAATCTGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAG                         GCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGAGGATGACCAAAGAC
genomic: AGGCTAAATCCGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAGgttggttcaa ... gcattcgcagGCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
EST: gi|349820408|gb|FQ406964.1|FQ406964
EST:     AGGCTAAATCTGAAAATCCTGTAACTGGCATTGATTTTAAACGAAAAGAG                         GCCTATCTGTCAGA
genomic: AGGCTAAATCCGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAGgttggttcaa ... gcattcgcagGCCTATCTGTCAGA
EST: gi|110429340|gb|EC995831.1|EC995831
EST:     AGGCTAAATCTGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAG                         GCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
genomic: AGGCTAAATCCGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAGgttggttcaa ... gcattcgcagGCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
EST: gi|349823009|gb|FQ399988.1|FQ399988
EST:     AGGCTAAATCTGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAG                         GCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
genomic: AGGCTAAATCCGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAGgttggttcaa ... gcattcgcagGCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
EST: gi|22015411|gb|BQ800445.1|BQ800445
EST:     AGGCTAAATCCGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAG                         GCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
genomic: AGGCTAAATCCGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAGgttggttcaa ... gcattcgcagGCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
EST: gi|349809695|gb|FQ398308.1|FQ398308
EST:     AGGCTAAATCTGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAG                         GCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
genomic: AGGCTAAATCCGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAGgttggttcaa ... gcattcgcagGCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
EST: gi|351053243|gb|FQ456729.1|FQ456729
EST:     AGGCTAAATCTGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAG                         GCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
genomic: AGGCTAAATCCGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAGgttggttcaa ... gcattcgcagGCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
EST: gi|30297697|gb|CB974491.1|CB974491
EST:     AGGCTAAATCTGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAG                         GCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
genomic: AGGCTAAATCCGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAGgttggttcaa ... gcattcgcagGCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
EST: gi|349815297|gb|FQ400452.1|FQ400452
EST:     AGGCTAAATCTGAAAATCCTGTAACTGGTATTGATTTTAAACGAAGAGAG                         GCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
genomic: AGGCTAAATCCGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAGgttggttcaa ... gcattcgcagGCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
EST: gi|110376739|gb|EC941812.1|EC941812
EST:     AGGCTAAATCCGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAG                         GCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
genomic: AGGCTAAATCCGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAGgttggttcaa ... gcattcgcagGCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
EST: gi|351015572|gb|FQ426814.1|FQ426814
EST:     AGGCTAAATCTGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAG                         GCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
genomic: AGGCTAAATCCGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAGgttggttcaa ... gcattcgcagGCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
EST: gi|110360867|gb|EC924301.1|EC924301
EST:     AGGCTAAATCTGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAG                         GCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
genomic: AGGCTAAATCCGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAGgttggttcaa ... gcattcgcagGCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
EST: gi|349810179|gb|FQ401625.1|FQ401625
EST:     AGGCTAAATCTGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAG                         GCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
genomic: AGGCTAAATCCGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAGgttggttcaa ... gcattcgcagGCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
EST: gi|110684611|gb|EE062086.1|EE062086
EST:     AGGCTAAATCCGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAG                         GCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
genomic: AGGCTAAATCCGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAGgttggttcaa ... gcattcgcagGCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
EST: gi|349809180|gb|FQ398953.1|FQ398953
EST:     AGGCTAAATCTGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAG                         GCCTATCTGTCAGATGA
genomic: AGGCTAAATCCGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAGgttggttcaa ... gcattcgcagGCCTATCTGTCAGATGA
EST: gi|71883119|gb|DT032174.1|DT032174
EST:     AGGCTAAATCTGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAG                         GCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
genomic: AGGCTAAATCCGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAGgttggttcaa ... gcattcgcagGCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
EST: gi|110378230|gb|EC943350.1|EC943350
EST:     AGGCTAAATCCGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAG                         GCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
genomic: AGGCTAAATCCGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAGgttggttcaa ... gcattcgcagGCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
EST: gi|34542487|gb|CF510719.1|CF510719
EST:     AGGCTAAATCTGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAG                         GCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
genomic: AGGCTAAATCCGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAGgttggttcaa ... gcattcgcagGCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
EST: gi|349824653|gb|FQ413320.1|FQ413320
EST:     AGGCTAAATCTGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAG                         GCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
genomic: AGGCTAAATCCGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAGgttggttcaa ... gcattcgcagGCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
EST: gi|71885653|gb|DT034708.1|DT034708
EST:     AGGCTAAATCTGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAG                         GCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
genomic: AGGCTAAATCCGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAGgttggttcaa ... gcattcgcagGCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
EST: gi|110411433|gb|EC977146.1|EC977146
EST:     AGGCTAAATCTGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAG                         GCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
genomic: AGGCTAAATCCGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAGgttggttcaa ... gcattcgcagGCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
EST: gi|349819164|gb|FQ412058.1|FQ412058
EST:     AGGCTAAATCTGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAG                         GCCTATCTGTCAAATGA
genomic: AGGCTAAATCCGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAGgttggttcaa ... gcattcgcagGCCTATCTGTCAGATGA
EST: gi|349818825|gb|FQ409359.1|FQ409359
EST:     AGGCTAAATCTGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAG                         GCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
genomic: AGGCTAAATCCGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAGgttggttcaa ... gcattcgcagGCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
EST: gi|33410184|gb|CF215811.1|CF215811
EST:     AGGCTAAATCCGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAG                         GCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
genomic: AGGCTAAATCCGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAGgttggttcaa ... gcattcgcagGCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
EST: gi|351016363|gb|FQ446223.1|FQ446223
EST:     AGGCCAAATCTGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAG                         GCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
genomic: AGGCTAAATCCGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAGgttggttcaa ... gcattcgcagGCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
EST: gi|349810657|gb|FQ402900.1|FQ402900
EST:     AGGCTAAATCTGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAG                         GCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
genomic: AGGCTAAATCCGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAGgttggttcaa ... gcattcgcagGCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
EST: gi|30297765|gb|CB974559.1|CB974559
EST:     AGGCTAAATCTGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAG                         GCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
genomic: AGGCTAAATCCGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAGgttggttcaa ... gcattcgcagGCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
EST: gi|34542395|gb|CF510627.1|CF510627
EST:     AGGCTAAATCTGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAG                         GCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
genomic: AGGCTAAATCCGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAGgttggttcaa ... gcattcgcagGCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
EST: gi|27584158|gb|CB006853.1|CB006853
EST:     AGGCTAAATCCGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAG                         GCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
genomic: AGGCTAAATCCGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAGgttggttcaa ... gcattcgcagGCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
EST: gi|349830660|gb|FQ416958.1|FQ416958
EST:     AGGCTAAATCTGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAG                         GCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCCAAGAC
genomic: AGGCTAAATCCGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAGgttggttcaa ... gcattcgcagGCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
EST: gi|110367116|gb|EC931039.1|EC931039
EST:     AGGCTAAATCCGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAG                         GCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
genomic: AGGCTAAATCCGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAGgttggttcaa ... gcattcgcagGCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
EST: gi|71889802|gb|DT038857.1|DT038857
EST:     AGGCTAAATCTGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAG                         GCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
genomic: AGGCTAAATCCGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAGgttggttcaa ... gcattcgcagGCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
EST: gi|110408924|gb|EC974572.1|EC974572
EST:     AGGCTAAATCTGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAG                         GCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
genomic: AGGCTAAATCCGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAGgttggttcaa ... gcattcgcagGCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
EST: gi|110360995|gb|EC924443.1|EC924443
EST:     AGGCTAAATCTGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAG                         GCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
genomic: AGGCTAAATCCGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAGgttggttcaa ... gcattcgcagGCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
EST: gi|349820087|gb|FQ404809.1|FQ404809
EST:     AGGCTAAATCTGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAG                         GCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
genomic: AGGCTAAATCCGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAGgttggttcaa ... gcattcgcagGCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
EST: gi|110363622|gb|EC927224.1|EC927224
EST:     AGGCTAAATCCGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAG                         GCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
genomic: AGGCTAAATCCGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAGgttggttcaa ... gcattcgcagGCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
EST: gi|110426531|gb|EC992944.1|EC992944
EST:     AGGCTAAATCTGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAG                         GCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
genomic: AGGCTAAATCCGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAGgttggttcaa ... gcattcgcagGCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
EST: gi|110404259|gb|EC969040.1|EC969040
EST:     ATTGATTTTAAACGAAGAGAG                         GCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC
genomic: ATTGATTTTAAACGAAGAGAGgttggttcaa ... gcattcgcagGCCTATCTGTCAGATGAGGAGTTCCAGACCGTACTGGGGATGACCAAAGAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGACATTGGCACTGAAGCTGGTCAAAGTACATTCAGTTATGATCAACTCAAGGCTAAATCCGAAAATCCTGTAACTGGCATTGATTTTAAACGAAGAGAGgttggttcaactttaaatatgactatttcgttttaaattcctcatgtttttatttgcaatttcaaaaaaatttccctttgcattcgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA