Sequence
atgc intronic sequence ATGC exonic sequenceTGCTGAGCCTGATGCACTTGATGATGATCTAGTAAATGCTTGGGCAGCAAACCTTGGTGATGATGGCCTGTGGGGTAAAAATGCACCAGCAATGAATAGAgtaagagttatgtcttatctcatgttaagatttgaattgcattcttgcttttgaattataatttggaaaacaggatatagttaacttattttgtcttgac...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0031g02090.t01 (Vitis vinifera), 5'ss of exon 21
lower sequence: GLYMA08G03020.1 (Glycine max), 5'ss of exon 20
TGCTGAGCCTGATGCACTTGATGATGATCTAGTAAATGCTTGGGCAGCAAACCTTGGTGATGATGGCCTGTGGGGTAAAAATGCACCAGCAATGAATAGAgtaagagttatgtcttatctcatgttaagatttgaattgcattcttgcttttgaattataatttggaaaacaggatatagttaacttattttgtcttgac----
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TGCTGAGCCTGATACACTTGATGATGACCTAGTAAATGCTTGGGCAGCAAACCTTGGTGATGATGGCTTATGGGGAAACAATGCACCAGCAATGAATAGGgtataagttagttaatgtattgcctttt-atctatttttctttccttctctttaatttga--ttagaaaatattttactgatg-cttatgcggtagtgtgtata
upper sequence: Vv07s0031g02090.t01 (Vitis vinifera), 5'ss of exon 21
lower sequence: GLYMA05G36530.1 (Glycine max), 5'ss of exon 20
TGCTGAGCCTGATGCACTTGATGATGATCTAGTAAATGCTTGGGCAGCAAACCTTGGTGATGATGGCCTGTGGGGTAAAAATGCACCAGCAATGAATAGAgtaagagttatgtcttatctcatgttaagatttgaattgcattcttgcttttgaattataatttggaaaacaggatatagttaacttattttgtcttgac----
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TGCTGAGCCTGATACACTTGATGATGACCTAGTAAATGCTTGGGCAGCAAACCTTGGTGATGATGGCTTATGGGGGAACAACGCACCAGCAATGAATAGGgtataagttagttaatgtattgcctttt-atctattttgctttccttctctttaatttga--ttagaaaatattttactaatg-cttatgtggtagagtgtgtg
upper sequence: Vv07s0031g02090.t01 (Vitis vinifera), 5'ss of exon 21
lower sequence: AT2G07360.1 (Arabidopsis thaliana), 5'ss of exon 21
TGCTGAGCCTGATGCACTTGATGATGATCTAGTAAATGCTTGGGCAGCAAACCTTGGTGATGATGGCCTGTGGGGTAAAAATGCACCAGCAATGAATAGAgtaaga-gttatgtcttatctca--tgttaagat---ttgaattgcattcttgcttttgaattataatttggaaaacaggatatagttaacttattttgtcttgac
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CTCAAACTCCAGTGGTCTGGATGATGATTTGGTGAATGCTTGGGCTGCAAACCTTGGTGATGATGGTCTTCTTGGAAACAATGCCCCAGCAATGAGTAGGgtcagttgctat-ttttatctgaccttttaagataaacggattagtatgtgtgcagtttagtgcttgtgtgtctatttagatattctt--cttattaagatca---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161714032|gb|FC064107.1|FC064107EST: ACCTTGGTGATGATGGCCTGTGGGGTAAAAATGCACCAGCAATGAATAGA GTCAATGAATTTCTTGCTGGTGCTGGAACTGACGCTCCAGATGTTGAGGAG
genomic: ACCTTGGTGATGATGGCCTGTGGGGTAAAAATGCACCAGCAATGAATAGAgtaagagtta ... tctatgttagGTCAATGAATTTCTTGCTGGTGCTGGAACTGACGCTCCAGATGTTGAGGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGCTGAGCCTGATGCACTTGATGATGATCTAGTAAATGCTTGGGCAGCAAACCTTGGTGATGATGGCCTGTGGGGTAAAAATGCACCAGCAATGAATAGAgtaagagttatgtcttatctcatgttaagatttgaattgcattcttgcttttgaattataatttggaaaacaggatatagttaacttattttgtcttgac
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