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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACAGAGTCAGAGATATTAAATGCACTGAAGACATTAGCAAATAATCGAACTTCAATCTTTATAGCACATAGACTTACAACTGCGATGCAGTGTGACGAGgtaactattattgtagtgaccatgctagattttgtgaatttcccaagaggttactttatatgcaccacattacatttattgcaagtattcttttttatat...

Basic information

species Vitis vinifera
transcript Vv06s0004g08350.t01
intron # 21
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g08350.t01 (Vitis vinifera), 5'ss of exon 21
lower sequence: GRMZM2G032936_T01 (Zea mays), 5'ss of exon 14
AACAGAGTCAGAGATATTAAATGCACTGAAGACATTAGCAAATAATCGAACTTCAATCTTTATAGCACATAGACTTACAACTGCGATGCAGTGTGACGAGgta-------actattattgtagtgaccatgctagattttgtgaatttcccaagag-----gttactttatatgcaccacattaca---tttattgcaagtattcttttttatat----
 || ||  ||   || || ||| | |||||  | ||| |     ||||||| ||||||||||| || ||| |||| |||||||| |||||||||||  |||||        | | |  |  ||  |||||  ||  |||||    |     ||  |     |||  ||  | |  | |   |  ||   ||| ||   |  |||| | ||||| |    
TACTGAAGCATCAATTTTGAATTCTCTGAAATCCTTATCTTCCGATCGAACATCAATCTTTATTGCTCATCGACTCACAACTGCAATGCAGTGTGATCAGgtacgcttctgcaacttctccagaaaccatagtacgttttgaatgtcagtaaatggtgaatgttggttggttta-atcttgtctcaagtttttttttgatgattcctctttattttcag

upper sequence: Vv06s0004g08350.t01 (Vitis vinifera), 5'ss of exon 21
lower sequence: GLYMA02G40490.1 (Glycine max), 5'ss of exon 18
AACAGAGTCAGAGATATTAAATGCACTGAAGACATTAGCAAATAATCGAACTTCAATCTTTATAGCACATAGACTTACAACTGCGATGCAGTGTGACGAGgtaactattattgtagtgaccatgctagattttgtgaatttcccaagaggttactttatatgcaccacattacatttattgcaagtattcttttttatat-------------
||||||  |||| || |||| |||  | ||  || ||||||||||||| ||||| || || || || || || ||||| ||||| |||||||||||||||||||     ||| ||   | |    ||| |||| || | |||| |   | ||  | ||||      | | || ||||  || |||| | | |   ||  |             
AACAGAAGCAGAAATTTTAAGTGCGTTAAATTCAGTAGCAAATAATCGGACTTCCATATTCATTGCTCACAGGCTTACCACTGCAATGCAGTGTGACGAGgtaa-----attatatctatc----tag-ttttatgtagttccta---gttttatgtatacctgttataataaattttatgtaagtttacatagatagctccagaacacagtt

upper sequence: Vv06s0004g08350.t01 (Vitis vinifera), 5'ss of exon 21
lower sequence: GLYMA14G38800.1 (Glycine max), 5'ss of exon 18
AACAGAGTCAGAGATATTAAATGCACTGAAGACATTAGCAAATAATCGAACTTCAATCTTTATAGCACATAGACTTACAACTGCGATGCAGTGTGACGAGgtaactattattgtagtgaccatgctagattttgtgaatttcccaagaggttactttatatg-caccacat-tacatttattgcaagtattcttttttatat
||||||  ||||||| |||| |||| | ||| || ||||||||||||| ||||| || || || || || || ||||| || || |||||||||||||||||||    | | ||  | |      || |   |    | |||| |     |   | || ||| |   |  | || | || ||  ||  | | || |  |   
AACAGAAGCAGAGATTTTAAGTGCATTAAAGTCAGTAGCAAATAATCGGACTTCCATATTCATTGCTCACAGGCTTACCACAGCAATGCAGTGTGACGAGgtaaactctctagtttt-atgtccttaaacagtacttaattcctagattctatatataaatgtctgaatgtgtatacttgttataacaaattttatgcaag-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30256194|gb|CB972037.1|CB972037
EST:     CTTCAATCTTTATAGCACATAGACTTACAACTGCGATGCAGTGTGACGAG                         ATTATTGTTCTGGAGAACGGGACGGTGATTGAACAGGGACCACATGAAGTT
genomic: CTTCAATCTTTATAGCACATAGACTTACAACTGCGATGCAGTGTGACGAGgtaactatta ... tggttttcagATTATTGTTCTGGAGAACGGGACGGTGATTGAACAGGGACCACATGAAGTT
EST: gi|30256126|gb|CB971969.1|CB971969
EST:     CTTCAATCTTTATAGCACATAGACTTACAACTGCGATGCAGTGTGACGAG                         ATTATTGTTCTGGAGAACGGGACGGGGATTGAACAGGGACCACATGAAGTT
genomic: CTTCAATCTTTATAGCACATAGACTTACAACTGCGATGCAGTGTGACGAGgtaactatta ... tggttttcagATTATTGTTCTGGAGAACGGGACGGTGATTGAACAGGGACCACATGAAGTT
EST: gi|352778181|gb|FQ468843.1|FQ468843
EST:     CTTCAATCTTTATAGCACATAGACTTACAACTGCGATGCAGTGTGACGAG                         ATTATTGTTCTGGAGAACGGGACGGTGATTGAACAGGGACCACATGAAGTT
genomic: CTTCAATCTTTATAGCACATAGACTTACAACTGCGATGCAGTGTGACGAGgtaactatta ... tggttttcagATTATTGTTCTGGAGAACGGGACGGTGATTGAACAGGGACCACATGAAGTT