Sequence
atgc intronic sequence ATGC exonic sequenceGTACATTGAAGAAAGATCATTTAGGAGATTTGTTGAAGCTTGCCTGGAAGAAACTGTGGTTGTTTATGTTGATCACCTCCTGACACAGgtttttgttgaaaagaatttatagtttcccatttgttggatatatttttgtatgtatcctcctgtaatatcttttgtttccttgcatgaatggcttaatgatgcttgtgattgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0097g00670.t01 (Vitis vinifera), 5'ss of exon 21
lower sequence: LOC_Os02g51430.1 (Oryza sativa), 5'ss of exon 21
GTACATTGAAGAAAGATCATTTAGGAGATTTGTTGAAGCTTGCCTGGAAGAAACTGTGGTTGTTTATGTTGATCACCTCCTGACACAGgtttttgttgaaaagaatttatagtttcccatttgttggatatatttttgtatgtatcctcctgtaatatcttttgtttccttgcatgaatggctta-atgatgcttgtgattgcag
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ATATATTGAAGAAAGATCATTTCGAAGATTTGTGGAGGCTTGCCTGGAGCAAACAATTGTGGTATACGTTGATCATCTCCTTACTCAGgtttgc----agaactgcccttagta-ctgaatagttgtatacttggccagttgtggttctctgtacaaaaatgactgttaacaaaaatatgaattggaaaatgt------------
upper sequence: Vv03s0097g00670.t01 (Vitis vinifera), 5'ss of exon 21
lower sequence: GRMZM2G161553_T01 (Zea mays), 5'ss of exon 3
GTACATTGAAGAAAGATCATTTAGGAGATTTGTTGAAGCTTGCCTGGAAGAAACTGTGGTTGTTTATGTTGATCACCTCCTGACACAGgtttttgttgaaaagaatttatagtttcccatttgttggatatatttttgtatgtatcc---tcctgtaatatcttttgtttccttgcatgaatggcttaatgatgcttgtgattgcag
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GTATATTGAAGAAAGACCATTTCGAAGATTTGTGGAGGCTTGCATAGAAGAAACAATCGTGGTCTATGTTGATCATCTCCTTTCCCAGgtttaca--gattacgcttagta--ttcaagttagttaaatccatatctgatagtgtccaaattagttcaaacctgttatactgtaccctaaacgtccatatct---------------
upper sequence: Vv03s0097g00670.t01 (Vitis vinifera), 5'ss of exon 21
lower sequence: GLYMA03G03120.2 (Glycine max), 5'ss of exon 22
GTACATTGAAGAAAGATCATTTAGGAGATTTGTTGAAGCTTGCCTGGAAGAAACTGTGGTTGTTTATGTTGATCACCTCCTGACACAGgtttt--tgttga-aaagaatttatagtttcccatttgttggatatatttttgtatgtatcctcctgtaatatcttttgtttccttgcatgaatggcttaatgatgcttgtgattgcag
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GTACATTGAAGAACGATCTTTTAGGAGATTTGTTGAAGCCTGCCTGGAAGAAACAGTGGTTGTTTATGTTGATCATCTTTTAACACAGgttctgatgtcaataaaacagttgttggcttttatttatgtactaaaattgtgcatattttcttctaacagctttgtatttatttgacttaattgttccactgatattt-taattgcag
upper sequence: Vv03s0097g00670.t01 (Vitis vinifera), 5'ss of exon 21
lower sequence: AT1G71820.1 (Arabidopsis thaliana), 5'ss of exon 22
GTACATTGAAGAAAGATCATTTAGGAGATTTGTTGAAGCTTGCCTGGAAGAAACTGTGGTTGTTTATGTTGATCACCTCCTGACACAGgtt------tttgttgaaaagaatttatagtttcc-catttgttggatatatttttgtatgtatcctcctgtaatatcttttgtttccttgcatgaatggcttaatgatgcttgtgattgcag
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GTATGTCGAAGAAAGATCATTTAGAAGATTTGTCGAAGCATGTTTGGAAGAAACAGTCGTTGTCTATGTTGACCATCTCCTAACTCAGgttcccccatttattctcaagcatttttaccttttatatttcatcagcatacacaaacactgaacctttggggttgacgtgtgtaattccag-------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|87583918|gb|DY473281.1|DY473281EST: CTTGCCTGGAAGAAACTGTGGTTGTTTATGTTGATCACCTCCTGACACAG AGAAACTATATAAAGGAAGAAACCATTGAACGGATGAGGCTAGATGAAGAG
genomic: CTTGCCTGGAAGAAACTGTGGTTGTTTATGTTGATCACCTCCTGACACAGgtttttgttg ... gtgattgcagAGAAACTATATAAAGGAAGAAACCATTGAACGGATGAGGCTAGATGAAGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTACATTGAAGAAAGATCATTTAGGAGATTTGTTGAAGCTTGCCTGGAAGAAACTGTGGTTGTTTATGTTGATCACCTCCTGACACAGgtttttgttgaaaagaatttatagtttcccatttgttggatatatttttgtatgtatcctcctgtaatatcttttgtttccttgcatgaatggcttaatgatgcttgtgattgcag
- - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - AAGAAA