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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGGGATCCTGCCAGCCGATTAGGATCAACCAGCGGTGCTAATGAAATCAAACAACATCTATTTTTCCGTGGAATTAACTGGCCTTTGATCCGCTGCATGgtagtaatcatcccatttctatttgtatgaaaaagggcctaatgttcttgatgtcaaacaagactgttaaacattcatactgatgtgcaaaccctgcatcaggagatagagtgcagttttttatatgttctatttgttgcatgcag

Basic information

species Vitis vinifera
transcript Vv03s0038g04210.t01
intron # 21
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0038g04210.t01 (Vitis vinifera), 5'ss of exon 21
lower sequence: GLYMA16G19560.1 (Glycine max), 5'ss of exon 23
CAGGGATCCTGCCAGCCGATTAGGATCAACCAGCGGTGCTAATGAAATCAAACAACATCTATTTTTCCGTGGAATTAACTGGCCTTTGATCCGCTGCATGgtagtaatcatcccatttctatttgtatgaaaaag-ggcctaatgttcttgatgtcaaacaagactgttaaacattcatactgatgtgcaaaccctgcatcaggagatagagtgcagttttttatatgttctatttgttgcatgcag
 || || ||  | || ||  |||| |||||||  ||||| ||||||||||| |||||||  |||||||||||||| || |||||| | ||||||  ||||||| || || |   |||||| ||    | |   |   |   ||| ||    |    ||  || |   |||  | |||| |  |||  |  |  | |   | |||                                           
AAGAGACCCAACAAGTCGTATAGGTTCAACCACTGGTGCCAATGAAATCAAGCAACATCCTTTTTTCCGTGGAATCAATTGGCCTCTTATCCGCAACATGgtaatattcttgtgatttcttttgaagtcagtcattagaaaaatattgactaccgtaagtaataaaattagtccttcaaa--gatacgtcagtcatt--ttagg-------------------------------------------

upper sequence: Vv03s0038g04210.t01 (Vitis vinifera), 5'ss of exon 21
lower sequence: GLYMA08G33520.1 (Glycine max), 5'ss of exon 4
CAGGGATCCTGCCAGCCGATTAGGATCAACCAGCGGTGCTAATGAAATCAAACAACATCTATTTTTCCGTGGAATTAACTGGCCTTTGATCCGCTGCATGgtagtaatcatcccatttctatttgtatgaaaaagggcctaa-tgttcttgatgtcaaacaagactgttaaacattcatactgatgtgcaaaccctgcatcaggagatagagtgcagttttttatatgttctatttgttgcatgcag
 || || ||  | || ||  |||| |||||||  ||||| |||||||||||||| ||||  ||||| |||||||| || |||||| | ||||||  ||||||| || || |   |||||| ||    | |   |      || | ||    ||   ||| || |   |||  | |||| |  |||     |  |  |  | |||                                           
AAGAGACCCAACAAGTCGTATAGGTTCAACCACTGGTGCCAATGAAATCAAACAGCATCCTTTTTTTCGTGGAATCAATTGGCCTCTTATCCGCAACATGgtaatattcttgtgatttcttttgaagtcagtgattataaaaatattgactatcgtaaataataaaattagcctttcaaa--gatacatcagtc--gttttagg-------------------------------------------