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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGGAACTTGCTGCTATATTCAAGAAAATTGGTGACAAGCAAACATGCACTATTGGTTTATATGAACTATACCGTATTACTCAACTGTACCCCAAGgtaaactataaattgcatggtatatgtttaaaagaagtttaagtagtgaatagcatgaggtttgttattggttgagctcgggccaaagattgctaacacaatgatctcttaattagatctatcttcctgtctactgcatttgccagaaagttaatttgtgatttctatttcag

Basic information

species Vitis vinifera
transcript Vv00s0652g00030.t01
intron # 21
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0652g00030.t01 (Vitis vinifera), 5'ss of exon 21
lower sequence: LOC_Os01g60040.2 (Oryza sativa), 5'ss of exon 49
CAGGAACTTGCTGCTATATTCAAGAAAATTGGTGACAAGCAAACATGCACTATTGGTTTATATGAACTATACCGTATTACTCAACTGTACCCCAAGgtaaactataaattgcatggtatatgtttaaaagaagtttaagt--agtgaatagcatgaggtttgttattggttgagctcgggccaaagattgctaacacaatgatctcttaattagatctatcttcctgtctactgcatttgccagaaagttaatttgtgatttctatttcag
|| || ||||||||| |||||||||||||||||||||| |||||||| || |||||| | |||||||| ||||| || || |||||||||||||||||| | |||      ||| ||  | ||  || |  |  |||  |  ||| | |  || |   | |   ||| ||| | ||    ||      || |    |||                                                                        
CAAGAGCTTGCTGCTGTATTCAAGAAAATTGGTGACAAACAAACATGTACAATTGGTCTTTATGAACTCTACCGGATAACCCAACTGTACCCCAAGgtatattatt-----catcgtgaaagtgcaacatgatgttatataaagtaattgccaggtcctgtacaatttgttcatctttcacctggtcctggtggatcaagt----------------------------------------------------------------------

upper sequence: Vv00s0652g00030.t01 (Vitis vinifera), 5'ss of exon 21
lower sequence: GRMZM2G068755_T01 (Zea mays), 5'ss of exon 50
CAGGAACTTGCTGCTATATTCAAGAAAATTGGTGACAAGCAAACATGCACTATTGGTTTATATGAACTATACCGTATTACTCAACTGTACCCCAAGgtaaactataaattgcatggtatatgtttaaaagaagtttaagtagtgaatagcatgaggtttgttat-tggttgagctcgggccaaagattgctaacacaatg---atctcttaattagatctatctt-cctgtctactgcatttgccaga----aagttaatttgtgatttctatttcag
|| || ||||||||||| ||||||||||||||||||||||||||||| || |||||  | |||||||| || || || ||||| || ||||| ||||||   |||      | | || ||  |  | |  ||  ||          | |       ||||| |  |||  |   ||    || |  ||  | |  || |    || | || |||  |  | | ||   | |  |      || || |     ||  | || ||  ||   ||| ||||
CAAGAGCTTGCTGCTATTTTCAAGAAAATTGGTGACAAGCAAACATGTACCATTGGCCTCTATGAACTGTATCGGATAACTCAGCTCTACCCAAAGgta--ttatt-----cctagtgtacttccacattaacattcgtattcctttggggaactatttgtaaaatggcggtcttcattgcagattttaatcatgcactttgcatgttttcattgcaagtgttttgtttattgagcattctttcctgtttacaatctgatctgccatcattatctcag

upper sequence: Vv00s0652g00030.t01 (Vitis vinifera), 5'ss of exon 21
lower sequence: GRMZM2G009849_T02 (Zea mays), 5'ss of exon 32
CAGGAACTTGCTGCTATATTCAAGAAAATTGGTGACAAGCAAACATGCACTATTGGTTTATATGAACTATACCGTATTACTCAACTGTACCCCAAGgtaaactataaattgcatggtatatgtttaaaagaagtttaagtagtgaatagcatgaggtttgtt--attggttgagctcgggccaa-agattgctaacacaatgatctcttaattagatctatcttcctgtctactgcatttgccagaaagttaatttgtgatttctatttcag
|| || ||||||||| | ||||||||||| || |||||||||||||| |||||||| || || ||||| || || || ||||| || ||||| ||||||   |||  |     || | |||  |  || |   | ||| |  | ||  || |||||  || |  ||| | || || | | | || ||| |  ||      |                                                                       
CAAGAGCTTGCTGCTGTCTTCAAGAAAATCGGCGACAAGCAAACATGTACTATTGGCTTCTACGAACTGTATCGGATAACTCAGCTCTACCCAAAGgta--ttattcacacagtgttgtattatccaatggcatgtaacttatcaa--gc-tgaggcctgatggattaggtg-gcacagccaaagagaatattagtgtgctt----------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27585437|gb|CB008132.1|CB008132
EST:     GCACTATTGGTTTATATGAACTATACCGTATTACTCAACTGTACCCCAAG                         GTTGATATATTTGCGCAGCTCCAAAATGCTAGTGAGGCGTTTCGGACTTAT
genomic: GCACTATTGGTTTATATGAACTATACCGTATTACTCAACTGTACCCCAAGgtaaactata ... tctatttcagGTTGATATATTTGCGCAGCTCCAAAATGCTAGTGAGGCGTTTCGGACTTAT
EST: gi|161716243|gb|FC066506.1|FC066506
EST:     GCACTATTGGTTTATATGAACTATACCGTATTACTCAACTGTACCCCAAG                         GTTGATATATTTGCGCAGCTCCAAAATGCTAGTGAGGCGTTTCGGACTTAT
genomic: GCACTATTGGTTTATATGAACTATACCGTATTACTCAACTGTACCCCAAGgtaaactata ... tctatttcagGTTGATATATTTGCGCAGCTCCAAAATGCTAGTGAGGCGTTTCGGACTTAT
EST: gi|110724440|gb|EE100271.1|EE100271
EST:     GCACTATTGGTTTATATGAACTATACCGTATTACTCAACTGTACCCCAAG                         GTTGATATATTTGCGCAGCTCCAAAATGCTAGTGAGGCGTTTCGGACTTAT
genomic: GCACTATTGGTTTATATGAACTATACCGTATTACTCAACTGTACCCCAAGgtaaactata ... tctatttcagGTTGATATATTTGCGCAGCTCCAAAATGCTAGTGAGGCGTTTCGGACTTAT
EST: gi|110731172|gb|EE109088.1|EE109088
EST:     GCACTATTGGTTTATATGAACTATACCGTATTACTCAACTGTACCCCAAG                         GTTGATATATTTGCGCAGCTCCAAAATGCTAGTGAGGCGTTTCGGACTTAT
genomic: GCACTATTGGTTTATATGAACTATACCGTATTACTCAACTGTACCCCAAGgtaaactata ... tctatttcagGTTGATATATTTGCGCAGCTCCAAAATGCTAGTGAGGCGTTTCGGACTTAT
EST: gi|30301267|gb|CB978061.1|CB978061
EST:     GCACTATTGGTTTATATGAACTATACCGTATTACTCAACTGTACCCCAAG                         GTTGATATATTTGCGCAGCTCCAAAATGCTAGTGAGGCGTTTCGGACTTAT
genomic: GCACTATTGGTTTATATGAACTATACCGTATTACTCAACTGTACCCCAAGgtaaactata ... tctatttcagGTTGATATATTTGCGCAGCTCCAAAATGCTAGTGAGGCGTTTCGGACTTAT
EST: gi|30299345|gb|CB976139.1|CB976139
EST:     GCACTATTGGTTTATATGAACTATACCGTATTACTCAACTGTACCCCAAG                         GTTGATATATTTGCGCAGCTCCAAAATGCTAGTGAGGCGTTTCGGACTTAT
genomic: GCACTATTGGTTTATATGAACTATACCGTATTACTCAACTGTACCCCAAGgtaaactata ... tctatttcagGTTGATATATTTGCGCAGCTCCAAAATGCTAGTGAGGCGTTTCGGACTTAT
EST: gi|161712847|gb|FC062022.1|FC062022
EST:     GCACTATTGGTTTATATGAACTATACCGTATTACTCAACTGTACCCCAAG                         GTTGATATATTTGCGCAGCTCCAAAATGCTAGTGAGGCGTTTCGGACTTAT
genomic: GCACTATTGGTTTATATGAACTATACCGTATTACTCAACTGTACCCCAAGgtaaactata ... tctatttcagGTTGATATATTTGCGCAGCTCCAAAATGCTAGTGAGGCGTTTCGGACTTAT
EST: gi|71882640|gb|DT031695.1|DT031695
EST:     GCACTATTGGTTTATATGAACTATACCGTATTACTCAACTGTACCCCAAG                         GTTGATATATTTGCGCAGCTCCAAAATGCTAGTGAGGCGTTTCGGACTTAT
genomic: GCACTATTGGTTTATATGAACTATACCGTATTACTCAACTGTACCCCAAGgtaaactata ... tctatttcagGTTGATATATTTGCGCAGCTCCAAAATGCTAGTGAGGCGTTTCGGACTTAT
EST: gi|30301485|gb|CB978279.1|CB978279
EST:     GCACTATTGGTTTATATGAACTATACCGTATTACTCAACTGTACCCCAAG                         GTTGATATATTTGCGCAGCTCCAAAATGCTAGTGAGGCGTTTCGGACTTAT
genomic: GCACTATTGGTTTATATGAACTATACCGTATTACTCAACTGTACCCCAAGgtaaactata ... tctatttcagGTTGATATATTTGCGCAGCTCCAAAATGCTAGTGAGGCGTTTCGGACTTAT
EST: gi|77588937|gb|DV223719.1|DV223719
EST:     GCACTATTGGTTTATATGAACTATACCGTATTACTCAACTGTACCCCAAG                         GTTGATATATTTGCGCAGCTCCAAAATGCTAGTGAGGCGTTTCGGACTTAT
genomic: GCACTATTGGTTTATATGAACTATACCGTATTACTCAACTGTACCCCAAGgtaaactata ... tctatttcagGTTGATATATTTGCGCAGCTCCAAAATGCTAGTGAGGCGTTTCGGACTTAT
EST: gi|71886760|gb|DT035815.1|DT035815
EST:     GCACTATTGGTTTATATGAACTATACCGTATTACTCAACTGTACCCCAAG                         GTTGATATATTTGCGCAGCTCCAAAATGCTAGTGAGGCGTTTCGGACTTAT
genomic: GCACTATTGGTTTATATGAACTATACCGTATTACTCAACTGTACCCCAAGgtaaactata ... tctatttcagGTTGATATATTTGCGCAGCTCCAAAATGCTAGTGAGGCGTTTCGGACTTAT
EST: gi|71889922|gb|DT038977.1|DT038977
EST:     GCACTATTGGTTTATATGAACTATACCGTATTACTCAACTGTACCCCAAG                         GTTGATATATTTGCGCAGCTCCAAAATGCTAGTGAGGCGTTTCGGACTTAT
genomic: GCACTATTGGTTTATATGAACTATACCGTATTACTCAACTGTACCCCAAGgtaaactata ... tctatttcagGTTGATATATTTGCGCAGCTCCAAAATGCTAGTGAGGCGTTTCGGACTTAT
EST: gi|71886201|gb|DT035256.1|DT035256
EST:     GCACTATTGGTTTATATGAACTATACCGTATTACTCAACTGTACCCCAAG                         GTTGATATATTTGCGCAGCTCCAAAATGCTAGTGAGGCGTTTCGGACTTAT
genomic: GCACTATTGGTTTATATGAACTATACCGTATTACTCAACTGTACCCCAAGgtaaactata ... tctatttcagGTTGATATATTTGCGCAGCTCCAAAATGCTAGTGAGGCGTTTCGGACTTAT