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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTCTTCCTTAATGCCATTGCAAATCAGCTGCGCTATCCCAACAACCACACACATTTTTTCTCCTTTGTTCTTCTCTACTTGTTTGTTGAGGCAAGCCAGgtgagactcccccgactttcaacaccctcccacgggacatgatcaccttcttatagtctcaacctctgatggtgcag

Basic information

species Vitis vinifera
transcript Vv00s0144g00010.t01
intron # 21
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0144g00010.t01 (Vitis vinifera), 5'ss of exon 21
lower sequence: PP1S53_8V6.1 (Physcomitrella patens), 5'ss of exon 40
CCTCTTCCTTAATGCCATTGCAAATCAGCTGCGCTATCCCAACAACCACACACATTTTTTCTCCTTTGTTCTTCTCTACTTGTTTGTTGAGGCAAGCCAGgtgaga---ctcccccgactttcaacaccctcccacgggacatgatcacctt-cttatagtctcaacctctgatggtgcag----------------------------------------
 || || || |||||  | || |||||||||||||| |||||||| |||||| ||| |||||| | ||||||| | |   | | || |||||||      || ||    || || |  | |||||  | ||  |       | |||  ||   |   |    |  || | ||| ||  |||                                        
TCTGTTTCTGAATGCTGTGGCCAATCAGCTGCGCTACCCCAACAATCACACATATTATTTCTCGTGTGTTCTTTTATTTCTCTCTGCTGAGGCATTAGTAgtaagtactcttcctctgcattcaagcctctggctttatttacgatagccgaacacgttagtttcacgtttgagggatcagtgctaagtgctcacatttacgctttgtgttacgttttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34543098|gb|CF511330.1|CF511330
EST:     CACATTTTTTCTCCTTTGTTCTTCTCTACTTGTTTGTTGAGGCAAGCCAG                         GAAATCATCCAGGAGCAAATTACAAGAGTTTTGCTGGAACGCCTGATTGTA
genomic: CACATTTTTTCTCCTTTGTTCTTCTCTACTTGTTTGTTGAGGCAAGCCAGgtgagactcc ... gatggtgcagGAAATCATCCAGGAGCAAATTACAAGAGTTTTGCTGGAACGTCTGATTGTA
EST: gi|110731518|gb|EE106001.1|EE106001
EST:     CACATTTTTTCTCCTTTGTTCTTCTCTACTTGTTTGTTGAGGCAAGCCAG                         GAAATCATCCAGGAGCAAATTACAAGAGTTTTGCTGGAACGCCTGATTGTA
genomic: CACATTTTTTCTCCTTTGTTCTTCTCTACTTGTTTGTTGAGGCAAGCCAGgtgagactcc ... gatggtgcagGAAATCATCCAGGAGCAAATTACAAGAGTTTTGCTGGAACGTCTGATTGTA