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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTGGAGAATGCCAAAGTTGTGGGTCGGGTTCTTGAAATGTGTGTCTCAGACACAGCCACATTCTTTCCGTGTACTGTTACAGgtaattgatggtctatttgtgtacgaaaaatttctggttgccttctttgtaatttcgatttacagctttgtctaagtcatttactgcttgcag

Basic information

species Vitis vinifera
transcript Vv18s0001g08140.t01
intron # 20
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g08140.t01 (Vitis vinifera), 5'ss of exon 20
lower sequence: AT1G27595.1 (Arabidopsis thaliana), 5'ss of exon 18
GTGTGGAGAATGCCAAAGTTGTGGGTCGGGTTCTTGAAATGTGTGTCTCAGACACAGCCACATTCTTTCCGTGTACTGTTACAGgtaattgatggtctatttgtgtacgaaaaatttctggttgccttctttgtaatttcgatttacagctttgtctaagtcatttactgcttgcag
 | |||||  ||||||| ||||||   || ||||| |||||||||||||||||| |||| |||||||||| |||  | ||  |||||   ||     |  | |   |  | |    | | || |  ||      || | | | | ||   || || |   |  ||| | |       
ATCTGGAGGCTGCCAAAATTGTGGCCTGGCTTCTTAAAATGTGTGTCTCAGACAAAGCCGCATTCTTTCCCTGTTTTATTGGAGgtacaagaaaacgttgtggaagaatatacgagtttagt-gtattacccaaaaatccaaataactctttggtgt---tgttttgcag-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110374102|gb|EC938641.1|EC938641
EST:     TGAAATGTGTGTCTCAGACACAGCCACATTCTTTCCGTGTACTGTTACAG                         CTACCAGCTCCACAGCTTGAAAGTGCTCTGAACAAACATGCTAACCTCAGA
genomic: TGAAATGTGTGTCTCAGACACAGCCACATTCTTTCCGTGTACTGTTACAGgtaattgatg ... ctgcttgcagCTACCAGCTCCACAGCTTGAAAGTGCTCTGAACAAACATGCTAACCTCAGA