Sequence
atgc intronic sequence ATGC exonic sequenceAGGACTGAAAATGATAGGGTTTGCTTTGGTAGATCTGGAATACATGGCTGGGGCCTCTTTGCACGACAAGCTATTCAAGAAGGAGATATGgtacatactctaaaaagttcaaattacagagtttctaaggaaatttctttgtttcttttttaccccctgaaggttaaggaatgattctcgagttcattag...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0098g00350.t01 (Vitis vinifera), 5'ss of exon 20
lower sequence: GLYMA19G17460.1 (Glycine max), 5'ss of exon 11
AGGACTGAAAATGATAGGGTTTGCTTTGGTAGATCTGGAATACATGGCTGGGGCCTCTTTGCACGACAAGCTATTCAAGAAGGAGATATGgta-------catactctaaaaagttcaaattacagagtttctaaggaaatttctttgtttcttttttaccccctgaaggttaaggaatgattctcgagttcattag
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AGAACAGAAAATGAAAGAGTTTGCTTTGGTAGATCAGGCATACATGGATGGGGCCTCTTTGCACGTCAAAATATTCAAGAAGGGGAAATGgtatgaatgtcatattcaaatacgaaaagattacaaagattcatggta----tcttggcatgcttgggaattctaaagtctttcagtatggttctgcaaatttt---
upper sequence: Vv16s0098g00350.t01 (Vitis vinifera), 5'ss of exon 20
lower sequence: GLYMA06G13330.1 (Glycine max), 5'ss of exon 20
AGGACTGAAAATGATAGGGTTTGCTTTGGTAGATCTGGAATACATGGCTGGGGCCTCTTTGCACGACAAGCTATTCAAGAAGGAGATATGgtacatactctaaaaagttcaaattacagagtttctaaggaaatttctttgtttcttttttaccccctgaaggttaaggaatgattctcgagtt--cattag-
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AGAACCGAAAATGATCGGGTTTGCTTTGGTAGATCAGGCATACACGGATGGGGCCTCTTTGCACGTAGAAATATTCAAGAAGGAGACATGgtatgaatgttat---gctcaactatgataacattaatagacccacaacctgcttgtgtgtgatggtcaatcaataacgattgatacttttattagtattatg
upper sequence: Vv16s0098g00350.t01 (Vitis vinifera), 5'ss of exon 20
lower sequence: GLYMA04G41500.1 (Glycine max), 5'ss of exon 20
AGGACTGAAAATGATAGGGTTTGCTTTGGTAGATCTGGAATACATGGCTGGGGCCTCTTTGCACGACAAGCTATTCAAGAAGGAGATATGgtacatactctaaaaagttcaa--attacagagtttctaaggaaatttctttgtttcttttttaccccctgaaggttaaggaatgattctcgagttcattag-
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AGAACCGAAAATGAACGGGTTTGCTTTGGTAGATCAGGCATACATGAATGGGGCCTCTTTGCACGAAGAAATATTCAAGAAGGAGACATGgtatgaatgttat---gctcaactatgataacattaatagacccataatgttggtcaatcaacaacgatttatatttttattagtattatgaggaccaatggg
upper sequence: Vv16s0098g00350.t01 (Vitis vinifera), 5'ss of exon 20
lower sequence: AT5G53430.1 (Arabidopsis thaliana), 5'ss of exon 19
AGGACTGAAAATGATAGGGTTTGCTTTGGTAGATCTGGAATACATGGCTGGGGCCTCTTTGCACGACAAGCTATTCAAGAAGGAGATATGgtacatactctaaaaagttcaaattacagagtttctaaggaaatttctttgtttcttttttaccccctgaaggttaaggaatgattctcgagttcattag--
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AGGACAGAAATGGAACGGGTCTGCTTTGGTCGATCTGGTATACATGGATGGGGCCTTTTTGCGAGAAGAAATATTCAAGAAGGAGAAATGgtaagca-----gagccatcagaacatacttcttccaagaaagaaaatctacggcatttcctctgttgtgttgacgaatattgaaatgtaatttctttccagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30133456|gb|CB918795.1|CB918795EST: TACATGGCTGGGGCCTCTTTGCACGACAAGCTATTCAAGAAGGAGATATG GTTCTTGAATATCGAGGTGAACAAGTGAGGCGCAGTATTGCAGATATGAGG
genomic: TACATGGCTGGGGCCTCTTTGCACGACAAGCTATTCAAGAAGGAGATATGgtacatactc ... ttgtctatagGTTCTTGAATATCGAGGTGAACAAGTGAGGCGCAGTATTGCAGATATGAGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGGACTGAAAATGATAGGGTTTGCTTTGGTAGATCTGGAATACATGGCTGGGGCCTCTTTGCACGACAAGCTATTCAAGAAGGAGATATGgtacatactctaaaaagttcaaattacagagtttctaaggaaatttctttgtttcttttttaccccctgaaggttaaggaatgattctcgagttcattag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taaaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aggaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaggaat