Sequence
atgc intronic sequence ATGC exonic sequenceTTGTGAATGCTAGTGTTGGAACAGATCCATCATACTCTCTTGACCGGCTCCGGGAGGAGAACGATGCCATTGTTTTGGCTGTAGGAGCCACAAAACCAAGgtaaaaaactgaaaggggaaagctataggccatgatagtgtttaaatctatttgccactaagtagcttgtgttggactcatgaactgtgatttgtatcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0098g00290.t01 (Vitis vinifera), 5'ss of exon 20
lower sequence: GLYMA19G16450.1 (Glycine max), 5'ss of exon 16
TTGTGAATGCTAGTGTTGGAACAGATCCATCATACTCTCTTGACCGGCTCCGGGAGGAGAACGATGCCATTGTTTTGGCTGTAGGAGCCACAAAACCAAGgtaaaaaactgaaagggga--aagctataggccatgatagtgtttaaatctatttgccactaagtagcttgtgttggactcatgaactgtgatttgtatcag-
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TGGTGAGTGCTAATGTTGGACATGATCCTTTGTACTCTCTTGATCGGCTTCGAGAGGAAAACGATGCCATTGTCTTGGCTGTAGGAGCTACAAAACCTAGgtgagacagtgacatgagtcctatttattacctatgatttagttcaa-tttctgtgtcagaacgatggt-gtactgagaa-atacatataacttttcatgaag
upper sequence: Vv16s0098g00290.t01 (Vitis vinifera), 5'ss of exon 20
lower sequence: GLYMA06G13280.2 (Glycine max), 5'ss of exon 20
TTGTGAATGCTAGTGTTGGAACAGATCCATCATACTCTCTTGACCGGCTCCGGGAGGAGAACGATGCCATTGTTTTGGCTGTAGGAGCCACAAAACCAAGgtaaaaaactgaaaggggaaagctataggccatgatagt------gtttaaatctatttgccactaagtagct-tgtgttggactcat--gaactgt-----gatttgtatcag---------------------------
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TGGTGAATGCTAATATCGGGCATGATCCTTTATACTCTCTTGATAGACTTCGGGAGGAAAATGATGCTATTGTCTTGGCTGTAGGAGCCACAAAACCAAGgtgagaca-tagtgccggagtcctatatattattattgtttgtatatttagttcaatttcgcttggaatggatgtatattagaaaaaaaggaattgttaagagagatgcttcaaaggaagttttttttactttcaatgcag
upper sequence: Vv16s0098g00290.t01 (Vitis vinifera), 5'ss of exon 20
lower sequence: GLYMA04G41540.1 (Glycine max), 5'ss of exon 20
TTGTGAATGCTAGTGTTGGAACAGATCCATCATACTCTCTTGACCGGCTCCGGGAGGAGAACGATGCCATTGTTTTGGCTGTAGGAGCCACAAAACCAAGgtaaaaaactgaaaggggaaagctataggccatgatagtgt------ttaaatctatttgccactaagtagct-tgtgttggactcatgaactgtgatttgtatcag---------------------------------
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TGGTGAATGCTAATATCGGGCATGATCCTTTACATTCTCTCGATAGGCTTCGGGAGGAAAATAATGCTATTGTCTTGGCTGTAGGAGCCACAAAACCAAGgtgtgacg-tagtgccggagtcctatatattatcgttgtttgtatttttagttcaatttcgcttggaatggatgtatattagaaaaaggaatttttgttgagagatgcttcaaaggatgttttttttactttcaatgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161707509|gb|FC057735.1|FC057735EST: CGGGAGGAGAACGATGCCATTGTTTTGGCTGTAGGAGCCACAAAACCAAG GGACCTTCCTGTTCCGGGGCGGGAGTTATCAGGAATCCATTTTGCTATGAA
genomic: CGGGAGGAGAACGATGCCATTGTTTTGGCTGTAGGAGCCACAAAACCAAGgtaaaaaact ... tttgtatcagGGACCTTCCTGTTCCGGGGCGGGAGTTATCAGGAATCCATTTTGCTATGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTGTGAATGCTAGTGTTGGAACAGATCCATCATACTCTCTTGACCGGCTCCGGGAGGAGAACGATGCCATTGTTTTGGCTGTAGGAGCCACAAAACCAAGgtaaaaaactgaaaggggaaagctataggccatgatagtgtttaaatctatttgccactaagtagcttgtgttggactcatgaactgtgatttgtatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA