Sequence
atgc intronic sequence ATGC exonic sequenceAGTTGTGGCATATCTTTCTCGTGTGCTTGAGGCTGCATTCACTGCCCTAGAAGGTCTTAATAAGCAAGCTTTCCTGACTGAATTGgtatgatatcgtgatctctatgatatcttcggatataatatggttccttgactgctactgacccaaaatttcttttgacttcttttttctggtttcatgt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0046g02200.t01 (Vitis vinifera), 5'ss of exon 20
lower sequence: LOC_Os12g13590.2 (Oryza sativa), 5'ss of exon 17
AGTTGTGGCATATCTTTCTCGTGTGCTTGAGGCTGCATTCACTGCCCTAGAAGGTCTTAATAAGCAAGCTTTCCTGACTGAATTGgtatg-atatcgtgatctctatgatatcttcggatataatatggttccttgactgctactgacccaaaatttcttttgacttcttttttctggtttcatgt--
| |||| || ||||| |||||||| || |||| |||||||| ||| ||||||||||| ||||| || | || ||||||| ||||||| | ||| | | || | | | || || | | | | || | | ||| || || | || | | | | | | |
AATTGTAGCCTATCTATCTCGTGTTCTCGAGGTTGCATTCAGTGCTCTAGAAGGTCTCAATAAACAGTCCTTTTTGACTGAGCTGgtatgtaaatcttaacttcaaaattgttttt--atgttttcatgaactaagaatatgagaaacc-aatatattacgagattagaatagtgcactattgtatat
upper sequence: Vv15s0046g02200.t01 (Vitis vinifera), 5'ss of exon 20
lower sequence: GLYMA16G01660.1 (Glycine max), 5'ss of exon 20
AGTTGTGGCATATCTTTCTCGTGTGCTTGAGGCTGCATTCACTGCCCTAGAAGGTCTTAATAAGCAAGCTTTCCTGACTGAATTGgtatgatatcgtgatctctatgat---atcttcggatataatatggttccttgactgctactgacccaaaatttcttttgacttcttttttctggtttcatgt
|||||| || ||||||||||||||||| ||| ||||||| ||||| ||||||| ||||| || ||||| ||||||||||| |||||||||||| || | || || || | ||| |||| | | ||| | | | | || | || | |||| |
AGTTGTTGCTTATCTTTCTCGTGTGCTGGAGTCTGCATTTACTGCTTTAGAAGGCCTTAACAAACAAGCATTCCTGACTGAGTTGgtatgatattgtattgctgatcattggatatattgatttaatgt--cttattggat-caaatagttggctgcttgtacagaatcaagcagattggtggatgat
upper sequence: Vv15s0046g02200.t01 (Vitis vinifera), 5'ss of exon 20
lower sequence: GLYMA07G05160.1 (Glycine max), 5'ss of exon 20
AGTTGTGGCATATCTTTCTCGTGTGCTTGAGGCTGCATTCACTGCCCTAGAAGGTCTTAATAAGCAAGCTTTCCTGACTGAATTGgtatgatatcgt---gatctctatgatatcttcggatataatatggttccttgactgctactgacccaaaatttcttttgacttcttttttctggtttcatgt-
|||||| || ||||||||||||||||| ||| ||||||| ||||| ||||||| ||||| || ||||| ||||||||||| |||||||||||| || | | || || | ||| |||| | || || | | | || | || | | | | |||
AGTTGTTGCTTATCTTTCTCGTGTGCTGGAGTCTGCATTTACTGCTTTAGAAGGCCTTAACAAACAAGCATTCCTGACTGAGTTGgtatgatattgtatagctgatcattgaatatattgatttaatgtc-ttatttaatca--aatagttggctgcttgtacagaat-caagcagataggcggatgat
upper sequence: Vv15s0046g02200.t01 (Vitis vinifera), 5'ss of exon 20
lower sequence: AT5G12370.3 (Arabidopsis thaliana), 5'ss of exon 21
AGTTGTGGCATATCTTTCTCGTGTGCTTGAGGCTGCATTCACTGCCCTAGAAGGTCTTAATAAGCAAGCTTTCCTGACTGAATTGgtatgatatcgtgatctctat-gatatcttcggatataata-tggttccttgactgctactgacccaaaatttcttttgacttcttttttctggtttcatgt
|| ||||| |||||||| || || |||||| |||| ||||||||| | |||||||||||||||||||| |||||||||||| ||||||||| || | || | | ||| || | | | | | |||| | | | ||| || | | | ||| | | |
GGTCGTGGCTTATCTTTCCCGGGTACTTGAGTCTGCTTTCACTGCCTTGGAAGGTCTTAATAAGCAAGCCTTCCTGACTGAACTGgtatgatttctttctcaccacagatttcgttaagccttttggttactatttgatctgttcgaagtatttattcgccctggcctttgctttttattgcttt--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110373393|gb|EC937624.1|EC937624EST: AAGGTCTTAATAAGCAAGCTTTCCTGACTGAATTG GGAAACCACTTGCATAAAGGGCTGCTTAATCATTGGCAGAAGTTCACTTTC
genomic: AAGGTCTTAATAAGCAAGCTTTCCTGACTGAATTGgtatgatatc ... tatttcatagGGAAACCACTTGCATAAAGGGCTGCTTAATCATTGGCAGAAGTTCACTTTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGTTGTGGCATATCTTTCTCGTGTGCTTGAGGCTGCATTCACTGCCCTAGAAGGTCTTAATAAGCAAGCTTTCCTGACTGAATTGgtatgatatcgtgatctctatgatatcttcggatataatatggttccttgactgctactgacccaaaatttcttttgacttcttttttctggtttcatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acccaaaa