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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTTCAAACCTGGGAATGTTTCCTGTTGATCACTTCTGTGCAATTATAAACCCTCCACAGgtactttctctctcttttcctaattaaggactcgaacgaaactaagattacactaagttgtcattattgagcttttgtatctctctggtttaatgctgttatcttgcag

Basic information

species Vitis vinifera
transcript Vv13s0074g00150.t01
intron # 20
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0074g00150.t01 (Vitis vinifera), 5'ss of exon 20
lower sequence: GLYMA20G33080.1 (Glycine max), 5'ss of exon 20
CATTTCAAACCTGGGAATGTTTCCTGTTGATCACTTCTGTGCAATTATAAACCCTCCACAGgtactttctctctcttttcctaattaaggactcgaacgaaactaagattacactaagttgtcattattgagcttttgtatctctctggtttaatgctgttatcttgcag
|||||||||| | |||||||||||||| ||| | || ||||| ||||||||||| || ||||| |||||||||||| |  ||   |      ||  ||  |   | |   ||||     ||   |||   | ||  | ||| |  ||    |||       |      | 
CATTTCAAACTTAGGAATGTTTCCTGTGGATAAATTTTGTGCTATTATAAACCCCCCTCAGgttctttctctctctgtctctctct-----ttctcacacacacacgcacacacc----tgcacttacaaatctaatttatttgccttaagtaagagcaacaagaaaaaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|122690718|gb|EC956676.1|EC956676
EST:     TGGGAATGTTTCCTGTTGATCACTTCTGTGCAATTATAAACCCTCCACAG                         TCTGGTATTCTTGCTGTTGGTAGAGGCAACAAGGTTGTTGAACCAGTGGTT
genomic: TGGGAATGTTTCCTGTTGATCACTTCTGTGCAATTATAAACCCTCCACAGgtactttctc ... tatcttgcagTCTGGTATTCTTGCTGTTGGTAGAGGCAACAAGGTTGTTGAACCAGTGGTT
EST: gi|352772349|gb|FQ469874.1|FQ469874
EST:     TGGGAATGTTTCCTGTTGATCACTTCTGTGCAATTATAAACCCTCCACAG                         TCTGGTATTCTTGCTGTTGGTAGAGGCAACAAGGTTGTTGAACCAGTGGTT
genomic: TGGGAATGTTTCCTGTTGATCACTTCTGTGCAATTATAAACCCTCCACAGgtactttctc ... tatcttgcagTCTGGTATTCTTGCTGTTGGTAGAGGCAACAAGGTTGTTGAACCAGTGGTT
EST: gi|122691381|gb|EC975086.1|EC975086
EST:     TGGGAATGTTTCCTGTTGATCACTTCTGTGCAATTATAAACCCTCCACAG                         TCTGGTATTCTTGCTGTTGGTAGAGGCAACAAGGTTGTTGAACCAGTGGTT
genomic: TGGGAATGTTTCCTGTTGATCACTTCTGTGCAATTATAAACCCTCCACAGgtactttctc ... tatcttgcagTCTGGTATTCTTGCTGTTGGTAGAGGCAACAAGGTTGTTGAACCAGTGGTT