Sequence
atgc intronic sequence ATGC exonic sequenceGCAGTTGTCCTTTGCCAAGTAGAAAAATCCAAGGAAGATATGCTTAATCAGTTATACAGTTCTGTCAGgttggtactctttgccgtatggatacacgcaattctctaaatgccttaatatatatgttatcaaaaagaggaagtatgaatgctttactatcggaatact...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0035g01740.t01 (Vitis vinifera), 5'ss of exon 20
lower sequence: GLYMA17G00480.1 (Glycine max), 5'ss of exon 20
GCAGTTGTCCTTTGCCAAGTAGAAAAATCCAAGGAAGATATGCTTAATCAGTTATACAGTTCTGTCAGgttggtactctttgccgtatggatacacg--caattctctaaatgccttaatatatatgttatcaaaaagaggaagtatgaatgctttactatcggaatact
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GCAGTTGTTCTTTGCCAAGTAGAGAAAGCCAAAGAAGACATGCTGAACCAGCTATACAGTTCCGTCAGgttagtgttctc-gccgtactgtctgatgatcattgagtgtgttgcttcttaatggatattat-gtaatgtactgccattcaacctatattcactcctttca
upper sequence: Vv12s0035g01740.t01 (Vitis vinifera), 5'ss of exon 20
lower sequence: GLYMA07G40300.1 (Glycine max), 5'ss of exon 20
GCAGTTGTCCTTTGCCAAGTAGAAAAATCCAAGGAAGATATGCTTAATCAGTTATACAGTTCTGTCAGgttggtactctttgccgtatggatacacgcaattctctaaatgccttaatatatatgttatcaaaaagaggaagtatgaatgctttactatcgga---atact----
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GCAGTTGTTCTTTGCCAAGTAGAGAAAGCCAAAGAAGACATGCTCAACCAGCTATACAGTTCCATCAGgttggtgctgtct--cttctcgccgtactg---tctgatgatcattgagtgtgt-tgtttcttaacggatattatgt-aatgtactggcattcaacctatattcact
upper sequence: Vv12s0035g01740.t01 (Vitis vinifera), 5'ss of exon 20
lower sequence: AT1G59610.1 (Arabidopsis thaliana), 5'ss of exon 20
GCAGTTGTCCTTTGCCAAGTAGAAAAATCCAAGGAAGATATGCTTAATCAGTTATACAGTTCTGTCAGgttggtactctttgccgtatggatacacgcaattctctaaatgccttaatatatatgttatcaaaaagaggaagtatgaatgctttactatcggaatact-
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GCTGTTGTTCTCTGTCAAGTGGAGAAATCCAAGGAAGACATGCTGAATCAGCTATACAGCTCTATCAGgtt-----tcttaatatccttccccaatgtattgttgta---gcatcaatacagctgtttgcgttgtacttatatatctctcgcttgg-attgatctgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30135425|gb|CB920763.1|CB920763EST: GTAGAAAAATCCAAGGAAGATATGCTTAATCAGTTATACAGTTCTGTCAG TGCCCAAAGCACCGCAAGGATTGAAGAACTACTTCAGGAGGATCAGAATGT
genomic: GTAGAAAAATCCAAGGAAGATATGCTTAATCAGTTATACAGTTCTGTCAGgttggtactc ... tggttctcagTGCCCAAAGCACCGCAAGGATTGAAGAACTACTTCAGGAGGATCAGAATGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCAGTTGTCCTTTGCCAAGTAGAAAAATCCAAGGAAGATATGCTTAATCAGTTATACAGTTCTGTCAGgttggtactctttgccgtatggatacacgcaattctctaaatgccttaatatatatgttatcaaaaagaggaagtatgaatgctttactatcggaatact
- - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaatac