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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGGCTCTTTGGAGAATCTTGTTCGCAAGCGATATCAGAGTTTTGACACTGAAATCGGGGCTCAAATAGAGgtaatatatcattgttttctttttcttttgcttttatagctttatgtcttccattggaggataatgcccagtatgcacttatgcaacctccgaacag

Basic information

species Vitis vinifera
transcript Vv11s0052g01710.t01
intron # 20
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0052g01710.t01 (Vitis vinifera), 5'ss of exon 20
lower sequence: GLYMA17G07380.1 (Glycine max), 5'ss of exon 19
GATGGCTCTTTGGAGAATCTTGTTCGCAAGCGATATCAGAGTTTTGACACTGAAATCGGGGCTCAAATAGAGgtaatatatcattgttttctttttcttttgcttttatagctttatgtcttccattggaggataatgcccagtatgcacttatgcaacctccgaacag
||||| ||| | |   | |||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||| ||    |  |  |   |||   ||||    |||  ||  || |||  || |     |  ||  |  |||| |  | ||| |           
GATGGTTCTCTTGCTGAGCTTGTTCGTAAGCGTTATCAGAGTTTTGACACTGAAATTGGGGCTCAAATAGAGgtaaaat----tcttcctacattttccttgccaaaata-tttagtgccttttatggttaact--tgatcgatatggatgt-tgccatag--------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351031975|gb|FQ460232.1|FQ460232
EST:     TTCGCAAGCGATATCAGAGTTTTGACACTGAAATCGGGGCTCAAATAGAG                         GCTGGTAAGGCTGATTTTGAAATGCTAGAGAAGAAAGCCATGGAATGGGGA
genomic: TTCGCAAGCGATATCAGAGTTTTGACACTGAAATCGGGGCTCAAATAGAGgtaatatatc ... ctccgaacagGCTGGTAAGGCTGATTTTGAAATGCTAGAGAAGAAAGCCATGGAATGGGGA
EST: gi|351032492|gb|FQ458857.1|FQ458857
EST:     TTCGCAAGCGATATCAGAGTTTTGACACTGAAATCGGGGCTCAAATAGAG                         GCTGGTAAGGCTGATTTTGAAATGCTAGAGAAGAAAGCCATGGAATGGGGA
genomic: TTCGCAAGCGATATCAGAGTTTTGACACTGAAATCGGGGCTCAAATAGAGgtaatatatc ... ctccgaacagGCTGGTAAGGCTGATTTTGAAATGCTAGAGAAGAAAGCCATGGAATGGGGA
EST: gi|349809734|gb|FQ398359.1|FQ398359
EST:     TTCGCAAGCGATATCAGAGTTTTGACACTGAAATCGGGGCTCAAATAGAG                         GCTGGGTAAG-CTGATTTTGAAATGCTAGAAAAGAAAGCCAATG-AATGGG
genomic: TTCGCAAGCGATATCAGAGTTTTGACACTGAAATCGGGGCTCAAATAGAGgtaatatatc ... ctccgaacagGCTGG-TAAGGCTGATTTTGAAATGCTAGAGAAGAAAGCCA-TGGAATGGG
EST: gi|349811710|gb|FQ409707.1|FQ409707
EST:     TTCGCAAGCGATATCAGAGTTTTGACACTGAAATCGGGGCTCAAATAGAG                         GCTGGTAAGGCTGATTTTGAAATGCTAGAGAAGAAAGCCATGGAATGGGGA
genomic: TTCGCAAGCGATATCAGAGTTTTGACACTGAAATCGGGGCTCAAATAGAGgtaatatatc ... ctccgaacagGCTGGTAAGGCTGATTTTGAAATGCTAGAGAAGAAAGCCATGGAATGGGGA
EST: gi|349812955|gb|FQ411195.1|FQ411195
EST:     TTCGCAAGCGATATCAGAGTTTTGACACTGAAATCGGGGCTCAAATAGAG                         GCTGGTAAGGCTGATTTTGAAATGCTAGAGAAGAAAGCCATGGAATGGGGA
genomic: TTCGCAAGCGATATCAGAGTTTTGACACTGAAATCGGGGCTCAAATAGAGgtaatatatc ... ctccgaacagGCTGGTAAGGCTGATTTTGAAATGCTAGAGAAGAAAGCCATGGAATGGGGA
EST: gi|351032512|gb|FQ458877.1|FQ458877
EST:     TTCGCAAGCGATATCAGAGTTTTGACACTGAAATCGGGGCTCANATAGAG                         GCTGGTAAGGCTGATTTTGAAATGCTAGAGAAGAAAGCCATGGAATGGGGA
genomic: TTCGCAAGCGATATCAGAGTTTTGACACTGAAATCGGGGCTCAAATAGAGgtaatatatc ... ctccgaacagGCTGGTAAGGCTGATTTTGAAATGCTAGAGAAGAAAGCCATGGAATGGGGA
EST: gi|22015436|gb|BQ800470.1|BQ800470
EST:     TTCGCAAGCGATATCAGAGTTTTGACACTGAAATCGGGGCTCAAATAGAG                         GCTGGTAAGGCTGATTTTGAAATGCTAGAGAAGAAAGCCATGGAATGGGGA
genomic: TTCGCAAGCGATATCAGAGTTTTGACACTGAAATCGGGGCTCAAATAGAGgtaatatatc ... ctccgaacagGCTGGTAAGGCTGATTTTGAAATGCTAGAGAAGAAAGCCATGGAATGGGGA
EST: gi|349820047|gb|FQ404769.1|FQ404769
EST:     TTCGCAAGCGATATCAGAGTTTTGACACTGAAATCGGGGCTCAAATAGAG                         GCTGGTAAGGCTGATTTTGAAATGCTAGAGAAGAAAGCCATGGAATGGGGA
genomic: TTCGCAAGCGATATCAGAGTTTTGACACTGAAATCGGGGCTCAAATAGAGgtaatatatc ... ctccgaacagGCTGGTAAGGCTGATTTTGAAATGCTAGAGAAGAAAGCCATGGAATGGGGA
EST: gi|29784962|gb|CB341547.2|CB341547
EST:     TTCGCAAGCGATATCAGAGTTTTGACACTGAAATCGGGGCTCAAATAGAG                         GCTGGTAAGGCTGATTTTGAAATGCTAGAGAAGAAAGCCATGGAATGGGGA
genomic: TTCGCAAGCGATATCAGAGTTTTGACACTGAAATCGGGGCTCAAATAGAGgtaatatatc ... ctccgaacagGCTGGTAAGGCTGATTTTGAAATGCTAGAGAAGAAAGCCATGGAATGGGGA