Sequence
atgc intronic sequence ATGC exonic sequenceGGGACCAGCCGACCCGCTCATTATCATGTTCTCTGGGATGAGAACAACTTTACAGCAGATGAGATCCAATCTTTGACGAACAACCTCTGTTACACgtaagacgcatcattcccttgcttctctttccagagttattaattttaccatgatttaatctggttgacaacttggttgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0016g04620.t01 (Vitis vinifera), 5'ss of exon 20
lower sequence: AC189879.3_FGT003 (Zea mays), 5'ss of exon 19
GGGACCAGCCGACCCGCTCATTATCATGTTCTCTGGGATGAGAACAACTTTACAGCAGATGAGATCCAATCTTTGACGAACAACCTCTGTTACACgtaagacgcatc-------attcccttgcttctctttccagagttattaattttaccatgatttaatctggttgacaacttggttgcag------
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GGAACAAGTAGGCCCGCTCACTACCATGTCCTCTGGGATGAGAACAATTTCACAGCAGACGAAATGCAAACACTGACAAACAACCTTTGCTACACgtaacgcacttctttgtatattttatatttgtcctttgcacatttaaattttttttgagaattttcttagcttgttatacatgttattgatgcag
upper sequence: Vv11s0016g04620.t01 (Vitis vinifera), 5'ss of exon 20
lower sequence: GRMZM2G079080_T02 (Zea mays), 5'ss of exon 20
GGGACCAGCCGACCCGCTCATTATCATGTTCTCTGGGATGAGAACAACTTTACAGCAGATGAGATCCAATCTTTGACGAACAACCTCTGTTACACgtaagacgcatcattcccttgct-------tctctt---tccagagttattaattttaccatgatttaatctggttgaca-acttggttgcag
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GGAACGAGTAGGCCTGCTCACTACCATGTCCTCTGGGATGAGAACAATTTCACAGCAGACGAAATGCAGACATTGACAAACAACCTTTGCTACACgtaatgcacttcttttatatgctatgtttgtcccttgcactttgaactttgaactttttgagaattttcttagattgatgtatactgatgcag
upper sequence: Vv11s0016g04620.t01 (Vitis vinifera), 5'ss of exon 20
lower sequence: GLYMA17G12850.1 (Glycine max), 5'ss of exon 20
GGGACCAGCCGACCCGCTCATTATCATGTTCTCTGGGATGAGAACAACTTTACAGCAGATGAGATCCAATCTTTGACGAACAACCTCTGTTACACgtaagacgcatcattcccttgcttct--ctttccagagttattaattttaccatgatttaatctggttgacaacttggttgcag
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GGTACAAGTAGACCAGCTCATTATCATGTTCTGTGGGACGAGAACAATTTCACTGCTGATGAGATCCAATCTCTGACCAACAACTTGTGCTACACgtaaaaaacctctctcacatcatcttaaatttgttgctccattattcttgtgatgaaataacctcatt---attttgattgtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33407837|gb|CF213464.1|CF213464EST: AACTTTACAGCAGATGAGATCCAATCTTTGACGAACAACCTCTGTTACAC GTATGCAAGGTGCACTCGGTCTGTTTCTCTAG
genomic: AACTTTACAGCAGATGAGATCCAATCTTTGACGAACAACCTCTGTTACACgtaagacgca ... ttggttgcagGTATGCAAGGTGCACTCGGTCTGTTTCTCTAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGGACCAGCCGACCCGCTCATTATCATGTTCTCTGGGATGAGAACAACTTTACAGCAGATGAGATCCAATCTTTGACGAACAACCTCTGTTACACgtaagacgcatcattcccttgcttctctttccagagttattaattttaccatgatttaatctggttgacaacttggttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC