Sequence
atgc intronic sequence ATGC exonic sequenceAAAGCAAGCAAACTCGTTGTAAAGAGATCATCACCAATGGATGGACAGCTTTTCCTTATAAAGCATCTTCTTATTTTAAGGGAGCAGgttatcttcccattttcttttcttttgtttcctaggcaattatttgaataagtaaaactgtatgactaatatttccaaattttgattttccag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0016g00350.t01 (Vitis vinifera), 5'ss of exon 20
lower sequence: LOC_Os08g34970.1 (Oryza sativa), 5'ss of exon 19
AAAGCAAGCAAACTCGTTGTAAAGAGATCATCACCAATGGATGGACAGCTTTTCCTTATAAAGCATCTTCTTATTTTAAGGGAGCAGgttatcttcccattttcttttcttttgtttcctaggcaattatttgaataagtaaaactgtatgactaatatttccaaattttgattttccag
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AATGCAAGCAAGGTCATTGCAAAAAAAGCAACTGCAATGGATGGACAGCTTTTCCTAATTAAGCACCTTCTTATTTTAAGAGAACAGgtgatacaatt-tgtacagtatgtcaagtcaaaattttatagcatgcataagtccatcgg-gcaactcatgtggtactatacatgttttcag-
upper sequence: Vv11s0016g00350.t01 (Vitis vinifera), 5'ss of exon 20
lower sequence: GLYMA17G04990.1 (Glycine max), 5'ss of exon 19
AAAGCAAGCAAACTCGTTGTAAAGAGATCATCACCAATGGATGGACAGCTTTTCCTTATAAAGCATCTTCTTATTTTAAGGGAGCAGgttatcttcccattttcttttcttttgtttcctaggcaattatttgaataagtaaaactgtatgactaatatttccaaattttgattttccag
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AAAGCAAGCAAATTAATTGCAAAGAGATCATCACAAATGGACGGACAGCTCTTCCTTATAAAGCATCTTTTAATTTTAAGGGAGCAGgtaatcctgtcagactttcttgtgtaattatttagtagatt--ttatataatt-------tgtgagtaatcatt-----ttttggtcttccag
upper sequence: Vv11s0016g00350.t01 (Vitis vinifera), 5'ss of exon 20
lower sequence: AT1G73430.1 (Arabidopsis thaliana), 5'ss of exon 19
AAAGCAAGCAAACTCGTTGTAAAGAGATCATCACCAATGGATGGACAGCTTTTCCTTATAAAGCATCTTCTTATTTTAAGGGAGCAGgttatcttcccattttcttttcttttgtttcctaggcaattatttgaataagtaaaactgtatgactaatatttccaaattttgattttccag
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AAAGCCAGCAAGCTTATCATTAAGCGATCAACTACAATGGATGGCCAGCTTTTCCTTATCAAGCATCTCCTTATCTTGAGAGAACAGgtta-cggctgatctatcttaagtttgcttcttttgctattaagtgatgattttaaacaattt--tttat-tttccag---------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110701225|gb|EE078568.1|EE078568EST: TGGATGGACAGCTTTTCCTTATAAAGCATCTTCTTATTTTAAGGGAGCAG ATTGCTCCATTTGATATAGAATTTTCAGTCACACACAAAGAACTTGATTTC
genomic: TGGATGGACAGCTTTTCCTTATAAAGCATCTTCTTATTTTAAGGGAGCAGgttatcttcc ... gattttccagATTGCTCCATTTGATATAGAATTTTCAGTCACACACAAAGAACTTGATTTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAAGCAAGCAAACTCGTTGTAAAGAGATCATCACCAATGGATGGACAGCTTTTCCTTATAAAGCATCTTCTTATTTTAAGGGAGCAGgttatcttcccattttcttttcttttgtttcctaggcaattatttgaataagtaaaactgtatgactaatatttccaaattttgattttccag
- - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG