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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTGTTTCCATCACACCAAACCACCAAGTAGCATCCATATTTGCAGCAGCTTTCTATGCAGTATTCAATCTTTTCTCAGGCTTCTTCATCCCCAGACCAgtaagttcattttcctcagtggcatagccactttcatgccttccaaccaacctcatccactacaaactaactcaaacctccattaatgtttaaaatttcag

Basic information

species Vitis vinifera
transcript Vv09s0002g03640.t01
intron # 20
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g03640.t01 (Vitis vinifera), 5'ss of exon 20
lower sequence: GRMZM2G029506_T01 (Zea mays), 5'ss of exon 21
GACTGTTTCCATCACACCAAACCACCAAGTAGCATCCATATTTGCAGCAGCTTTCTATGCAGTATTCAATCTTTTCTCAGGCTTCTTCATCCCCAGACCAgtaagttcattttcctcagtggcatagccactttcatgccttccaaccaacctcatccactacaa-actaac-tcaaacctccattaatgtttaaaatttcag
| |||| || ||| | ||||||||  | || |||||||| || ||||||||||||| | |  | |||||||| ||||||||||||||||| || ||||| || ||||  || |    |    |||  |  |  || |   |||| |||      ||  | || |  ||| |  |     ||| |||  ||||| |        
GGCTGTCTCAATCTCCCCAAACCATGAGGTTGCATCCATCTTCGCAGCAGCTTTCTTTTCTCTCTTCAATCTCTTCTCAGGCTTCTTCATTCCGAGACCGgtcagtt-gttgtttcaatcaccatccctgcgatcct--tttcctacctgtaggattaaatagaggactcatgttttttctctattcctgtttcag-------

upper sequence: Vv09s0002g03640.t01 (Vitis vinifera), 5'ss of exon 20
lower sequence: GLYMA07G01860.1 (Glycine max), 5'ss of exon 22
GACTGTTTCCATCACACCAAACCACCAAGTAGCATCCATATTTGCAGCAGCTTTCTATGCAGTATTCAATCTTTTCTCAGGCTTCTTCATCCCCAGACCAgtaagttcattttcctcagtggcatagccactttcatgccttccaaccaacctcatccactacaaactaactcaaacctccattaatgtttaaaatttcag
|||||| ||||||||||||||||||||||| ||||| || ||||||||||| ||||||| | | || ||||| ||||| || ||||| ||||| ||||| || ||| |  ||     | |  | |    |  || |  |     |||  | || |   | |    ||||||  ||  || |    |  |||    ||||||
GACTGTGTCCATCACACCAAACCACCAAGTGGCATCAATCTTTGCAGCAGCATTCTATGGACTCTTTAATCTCTTCTCTGGTTTCTTTATCCCAAGACCGgtgagtaccattct---aatttcgttattatattgaaaca----aacatatcttacataatctttactaacataactcttctaccaactttggcttttcag

upper sequence: Vv09s0002g03640.t01 (Vitis vinifera), 5'ss of exon 20
lower sequence: GLYMA08G21540.1 (Glycine max), 5'ss of exon 21
GACTGTTTCCATCACACCAAACCACCAAGTAGCATCCATATTTGCAGCAGCTTTCTATGCAGTATTCAATCTTTTCTCAGGCTTCTTCATCCCCAGACCAgtaagttcattttcctcagtggcatagccactttcatgccttccaaccaacctcatccactacaaactaactcaaacctccattaatgtttaaaatttcag
|||||| ||||||||||||||||||||||| ||||| || ||||||||||| ||||||| | | || ||||| ||||| || ||||| ||||| ||||| || ||| |  || |   |||  | ||     ||| ||     | | |  | || |   | | |  |||||   |  | || |  ||  |||    ||||||
GACTGTGTCCATCACACCAAACCACCAAGTGGCATCAATCTTTGCAGCAGCATTCTATGGACTCTTTAATCTCTTCTCTGGTTTCTTTATCCCAAGACCGgtgagtaccattcc---agtttcgtaa----ttttattgaaacaagcatatcttacataatccttactaaaa-actcttctaccaac-tttggcttttcag

upper sequence: Vv09s0002g03640.t01 (Vitis vinifera), 5'ss of exon 20
lower sequence: GLYMA13G43140.1 (Glycine max), 5'ss of exon 21
GACTGTTTCCATCACACCAAACCACCAAGTAGCATCCATATTTGCAGCAGCTTTCTATGCAGTATTCAATCTTTTCTCAGGCTTCTTCATCCCCAGACCAgtaagt-tcattttc-ctcagtggcatagccactttcatgccttccaaccaacctcatccactacaaactaactcaaacctccattaatgtttaaaatttcag
|||||||||||| ||||||||||||||||| ||||| ||  ||| |||||| ||||| | | | |||||||| || || || || || ||||| |||||||||||| ||||| |   |   |   ||       |  | |     ||| |||    |     |    | | ||   |   |  ||| | ||||||   |||  
GACTGTTTCCATTACACCAAACCACCAAGTTGCATCAATCCTTGGAGCAGCATTCTACGGAATCTTCAATCTATTTTCTGGTTTTTTTATCCCAAGACCAgtaagtatcattctagtttgttattatgcatcaatagaagaagaacaaacaaataaagtatttgattatttaccttattttttattca-gtttaatcattc--

upper sequence: Vv09s0002g03640.t01 (Vitis vinifera), 5'ss of exon 20
lower sequence: GLYMA15G02220.1 (Glycine max), 5'ss of exon 22
GACTGTTTCCATCACACCAAACCACCAAGTAGCATCCATATTTGCAGCAGCTTTCTATGCAGTATTCAATCTTTTCTCAGGCTTCTTCATCCCCAGACCAgtaagt-tcattttcctcagtggcatagccactttcatgccttccaaccaacctcatccactacaaactaactcaaacctccattaatgtttaaaatttcag
|||||||||||| ||||||||||||||| | ||||| ||  ||| |||||| || ||||   | |||||||| || || || || || ||||| ||||||||||||  |||| |  |  |     ||  ||     ||       |  |    ||||   ||  ||  ||| |    | |  || ||  |||    ||||||
GACTGTTTCCATTACACCAAACCACCAAATTGCATCAATCCTTGGAGCAGCATTTTATGGGATCTTCAATCTCTTTTCTGGTTTTTTTATCCCAAGACCAgtaagtaccattctagtttggttattatgcatcaatataagaattactcg---tcatgttctctaacgtaatt---gcttgtatcaac-tttggcttttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161717628|gb|FC066907.1|FC066907
EST:     CTTTCTATGCAGTCTTCAATCTTTTCTCAGGCTTCTTCATCCCCAGACCA                         AAAATTCCCAAGTGGTGGATCTGGTACTATTGGATTTGCCCACTAGCATGG
genomic: CTTTCTATGCAGTATTCAATCTTTTCTCAGGCTTCTTCATCCCCAGACCAgtaagttcat ... aaaatttcagAAAATTCCCAAGTGGTGGATCTGGTACTATTGGATTTGCCCAGTAGCATGG
EST: gi|294967137|gb|GW840012.1|GW840012
EST:     CGTTCTATGCAGTCTTCAATCTTTTCTCAGGCTTCTTCATCCCCAGACCA                         AAAATTCCCAAGTGGTGGATCTGGTACTATTGGATTTGCCCAGTAGCATGG
genomic: CTTTCTATGCAGTATTCAATCTTTTCTCAGGCTTCTTCATCCCCAGACCAgtaagttcat ... aaaatttcagAAAATTCCCAAGTGGTGGATCTGGTACTATTGGATTTGCCCAGTAGCATGG