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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTCATCCGTTCTTACTGCTGAAACTAAGAAGCGGTCACCCGATGCCTCTCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTGgtaagggaaccatcaatagtcctgcttatctgtttgaaatggcactatctgttcagtgaaacacaattattttcaattatttatcataatctccccttct...

Basic information

species Vitis vinifera
transcript Vv08s0007g08690.t01
intron # 20
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351027047|gb|FQ439908.1|FQ439908
EST:     TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTG                         CTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
genomic: TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTGgtaagggaac ... acacatgcagCTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
EST: gi|349807848|gb|FQ402239.1|FQ402239
EST:     TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTG                         CTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
genomic: TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTGgtaagggaac ... acacatgcagCTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
EST: gi|33406439|gb|CF212066.1|CF212066
EST:     TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTG                         CTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
genomic: TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTGgtaagggaac ... acacatgcagCTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
EST: gi|349819933|gb|FQ404655.1|FQ404655
EST:     TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTG                         CTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
genomic: TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTGgtaagggaac ... acacatgcagCTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
EST: gi|349820408|gb|FQ406964.1|FQ406964
EST:     TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTG                         CTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
genomic: TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTGgtaagggaac ... acacatgcagCTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
EST: gi|349823009|gb|FQ399988.1|FQ399988
EST:     TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTG                         CTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
genomic: TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTGgtaagggaac ... acacatgcagCTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
EST: gi|22015411|gb|BQ800445.1|BQ800445
EST:     CCCGGAGAGTAGCCCTTCTG                         CTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
genomic: CCCGGAGAGTAGCCCTTCTGgtaagggaac ... acacatgcagCTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
EST: gi|349812248|gb|FQ411843.1|FQ411843
EST:     TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTG                         CTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
genomic: TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTGgtaagggaac ... acacatgcagCTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
EST: gi|349809695|gb|FQ398308.1|FQ398308
EST:     TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTG                         CTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
genomic: TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTGgtaagggaac ... acacatgcagCTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
EST: gi|351053243|gb|FQ456729.1|FQ456729
EST:     TCCTTCTCGATCCAGTAGAAGTCCTNNNNNNNNGGAGAGTAGCCCTTCTG                         CTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
genomic: TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTGgtaagggaac ... acacatgcagCTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
EST: gi|349815297|gb|FQ400452.1|FQ400452
EST:     TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTG                         CTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
genomic: TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTGgtaagggaac ... acacatgcagCTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
EST: gi|110376739|gb|EC941812.1|EC941812
EST:     TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTG                         CTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
genomic: TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTGgtaagggaac ... acacatgcagCTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
EST: gi|351015572|gb|FQ426814.1|FQ426814
EST:     TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTG                         CTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
genomic: TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTGgtaagggaac ... acacatgcagCTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
EST: gi|110360867|gb|EC924301.1|EC924301
EST:     TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTG                         CTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
genomic: TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTGgtaagggaac ... acacatgcagCTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
EST: gi|349810179|gb|FQ401625.1|FQ401625
EST:     TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTG                         CTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
genomic: TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTGgtaagggaac ... acacatgcagCTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
EST: gi|110684611|gb|EE062086.1|EE062086
EST:     CTCCTCCCCCGGAGAGTAGCCCTTCTG                         CTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
genomic: CTCCTCCCCCGGAGAGTAGCCCTTCTGgtaagggaac ... acacatgcagCTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
EST: gi|349820692|gb|FQ408521.1|FQ408521
EST:     TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTG                         CTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
genomic: TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTGgtaagggaac ... acacatgcagCTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
EST: gi|349809180|gb|FQ398953.1|FQ398953
EST:     TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTG                         CTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
genomic: TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTGgtaagggaac ... acacatgcagCTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
EST: gi|71885366|gb|DT034421.1|DT034421
EST:     TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTG                         CTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
genomic: TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTGgtaagggaac ... acacatgcagCTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
EST: gi|71883119|gb|DT032174.1|DT032174
EST:     TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTG                         CTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
genomic: TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTGgtaagggaac ... acacatgcagCTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
EST: gi|349812839|gb|FQ410481.1|FQ410481
EST:     TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTG                         CTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
genomic: TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTGgtaagggaac ... acacatgcagCTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
EST: gi|110378230|gb|EC943350.1|EC943350
EST:     TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTG                         CTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
genomic: TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTGgtaagggaac ... acacatgcagCTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
EST: gi|34542487|gb|CF510719.1|CF510719
EST:     TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTG                         CTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
genomic: TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTGgtaagggaac ... acacatgcagCTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
EST: gi|349824653|gb|FQ413320.1|FQ413320
EST:     TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTG                         CTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
genomic: TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTGgtaagggaac ... acacatgcagCTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
EST: gi|71885653|gb|DT034708.1|DT034708
EST:     TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTG                         CTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
genomic: TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTGgtaagggaac ... acacatgcagCTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
EST: gi|110411433|gb|EC977146.1|EC977146
EST:     CCGGAGAGTAGCCCTTCTG                         CTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
genomic: CCGGAGAGTAGCCCTTCTGgtaagggaac ... acacatgcagCTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
EST: gi|349819164|gb|FQ412058.1|FQ412058
EST:     TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTG                         CTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
genomic: TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTGgtaagggaac ... acacatgcagCTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
EST: gi|349807555|gb|FQ401914.1|FQ401914
EST:     TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTG                         CTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
genomic: TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTGgtaagggaac ... acacatgcagCTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
EST: gi|349818825|gb|FQ409359.1|FQ409359
EST:     TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTG                         CTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
genomic: TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTGgtaagggaac ... acacatgcagCTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
EST: gi|33410184|gb|CF215811.1|CF215811
EST:     TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTG                         CTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
genomic: TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTGgtaagggaac ... acacatgcagCTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
EST: gi|351016363|gb|FQ446223.1|FQ446223
EST:     TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTG                         CTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
genomic: TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTGgtaagggaac ... acacatgcagCTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
EST: gi|349810657|gb|FQ402900.1|FQ402900
EST:     TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTG                         CTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
genomic: TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTGgtaagggaac ... acacatgcagCTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
EST: gi|34542395|gb|CF510627.1|CF510627
EST:     TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTG                         CTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
genomic: TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTGgtaagggaac ... acacatgcagCTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
EST: gi|27584158|gb|CB006853.1|CB006853
EST:     TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTG                         CTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
genomic: TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTGgtaagggaac ... acacatgcagCTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
EST: gi|349818088|gb|FQ408863.1|FQ408863
EST:     TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTG                         CTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
genomic: TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTGgtaagggaac ... acacatgcagCTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
EST: gi|349830660|gb|FQ416958.1|FQ416958
EST:     TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTG                         CTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
genomic: TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTGgtaagggaac ... acacatgcagCTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
EST: gi|110367116|gb|EC931039.1|EC931039
EST:     TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTG                         CTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
genomic: TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTGgtaagggaac ... acacatgcagCTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
EST: gi|71889802|gb|DT038857.1|DT038857
EST:     TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTG                         CTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
genomic: TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTGgtaagggaac ... acacatgcagCTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
EST: gi|110408924|gb|EC974572.1|EC974572
EST:     TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTG                         CTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
genomic: TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTGgtaagggaac ... acacatgcagCTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
EST: gi|110360995|gb|EC924443.1|EC924443
EST:     TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTG                         CTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
genomic: TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTGgtaagggaac ... acacatgcagCTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
EST: gi|349819142|gb|FQ412036.1|FQ412036
EST:     TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTG                         CTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
genomic: TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTGgtaagggaac ... acacatgcagCTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
EST: gi|349820087|gb|FQ404809.1|FQ404809
EST:     TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTG                         CTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
genomic: TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTGgtaagggaac ... acacatgcagCTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
EST: gi|71870041|gb|DT019096.1|DT019096
EST:     TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTG                         CTGNCA-TAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATT
genomic: TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTGgtaagggaac ... acacatgcagCTG-CAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATT
EST: gi|110363622|gb|EC927224.1|EC927224
EST:     TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTG                         CTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
genomic: TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTGgtaagggaac ... acacatgcagCTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
EST: gi|110426531|gb|EC992944.1|EC992944
EST:     TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTG                         CTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG
genomic: TCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTGgtaagggaac ... acacatgcagCTGCAATAAAGAGTGAAATGGCTGTTTCTGAAACTGAGGATTCTCAAGGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTCTCATCCGTTCTTACTGCTGAAACTAAGAAGCGGTCACCCGATGCCTCTCCTTCTCGATCCAGTAGAAGTCCTCCTCCCCCGGAGAGTAGCCCTTCTGgtaagggaaccatcaatagtcctgcttatctgtttgaaatggcactatctgttcagtgaaacacaattattttcaattatttatcataatctccccttct

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agtgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctcccc