Sequence
atgc intronic sequence ATGC exonic sequenceGCATGTATAGGAGCCAAAGTCATTGCTAGTGAATCTTTATCAGCAATTAGGAAGGATGTTCTATCCAAATGCTATGgtaagataaaatctgccctcgtggactgtgcaaatgtcagtgaatccttttcttttccttactgaaatggcattcttgttcatttattttggaatattct...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0031g03050.t01 (Vitis vinifera), 5'ss of exon 20
lower sequence: LOC_Os02g06300.1 (Oryza sativa), 5'ss of exon 20
GCATGTATAGGAGCCAAAGTCATTGCTAGTGAATCTTTATCAGCAATTAGGAAGGATGTTCTATCCAAATGCTATGgtaagataaaatctgccctcgtggactgtgcaaatgtcagtgaatccttt----tcttttccttactgaaatggcattcttgttcatttattttgga-atat-tct------------------------------------------------------------------------------------
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GCATGTATAGGTGCAAAGGTCATTGCAAGTGAAGCACTATCAGCCATCAGGAAGGATGTCTTGTCAAAATGCTATGgtaa-acaacactaagacttgc--actttgagatcatca-taaatccattggaataatctctgttgtcttattctgttcatgactagttgtttcaaatatgtatctataggaaaaaaaaaaggatcgctgcattttcacattgtgaatttccataagtttatgttggacattattttcttttactttcag
upper sequence: Vv07s0031g03050.t01 (Vitis vinifera), 5'ss of exon 20
lower sequence: GLYMA06G16700.1 (Glycine max), 5'ss of exon 20
GCATGTATAGGAGCCAAAGTCATTGCTAGTGAATCTTTATCAGCAATTAGGAAGGATGTTCTATCCAAATGCTATGgtaagataaaatctgccctcgtggactgtgcaaatgtcagtgaatccttttcttttcc-----ttactgaaatggcattcttgttcatttattttggaatattct----------------------------------------------------------------------------------------
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GCGTGCATAGGATCAAAAGTGATTGCTAGTGAAGCGATATCTGCAATAAGGAAGGATGTACTAGCCAAATGCTACGgtgagacaaatggcaaacctttggggggggggggggggggtgttccttcttctcattcagatatttagaaaatagaaactatgaacggt-attttatgttgtactgcatccatctttctttcactttatttttccttgccctgttctgattgcctggattgcttttttgtaatttttctctttgatcttctagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|22010264|gb|BQ795298.1|BQ795298EST: TAGTGAATCTTTATCAGCAATTAGGAAGGATGTTCTATCCAAATGCTATG GTGGGGACATCACAAGGAAAAAGAAATTGCTTAAGAAACAG
genomic: TAGTGAATCTTTATCAGCAATTAGGAAGGATGTTCTATCCAAATGCTATGgtaagataaa ... gttcttctagGTGGGGACATCACAAGGAAAAAGAAATTGCTTAAGAAACAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCATGTATAGGAGCCAAAGTCATTGCTAGTGAATCTTTATCAGCAATTAGGAAGGATGTTCTATCCAAATGCTATGgtaagataaaatctgccctcgtggactgtgcaaatgtcagtgaatccttttcttttccttactgaaatggcattcttgttcatttattttggaatattct
- - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataaaat