Sequence
atgc intronic sequence ATGC exonic sequenceACAGCGGGATCCGCTTATTGAGTACAAGCTTGAAGGCTACAATCTATTCTTGGAGATGATGGCACAGATAAGAAGAAATGTTATTTATTCAATATACCAGgtatatattaaaccagagctagatattgtatcttcagtttgtgcacacatgtcacacagtacactcaccaattctctatttttatctcacctgcaatgcccttttcctatggcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g02610.t01 (Vitis vinifera), 5'ss of exon 20
lower sequence: GRMZM5G895400_T01 (Zea mays), 5'ss of exon 1
ACAGCGGGATCCGCTTATTGAGTACAAGCTTGAAGGCTACAATCTATTCTTGGAGATGATGGCACAGATAAGAAGAAATGTTATTTATTCAATATACCAGgtatatat-taaaccagagctagatattgtatcttcagtttgtgcacacatgtcacacagtacactcaccaattctctatttttatctcacctgcaatgcccttttcctatggcag
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CCAACGAGATCCCCTTATTGAGTATAAACTTGAGGGATATAATCTTTTCTTAGACATGATGGCTCAAATCAGGAGGAATGTTATTTATTCTGTATATCAGgtaagttcatccacatgtcctaaaaatttc--tttcatgctacgtttttgttttaaataatatttgaacca-----ctaagtttggagtaa-tgtaattactacttca--------
upper sequence: Vv07s0005g02610.t01 (Vitis vinifera), 5'ss of exon 20
lower sequence: GLYMA10G27810.1 (Glycine max), 5'ss of exon 20
ACAGCGGGATCCGCTTATTGAGTACAAGCTTGAAGGCTACAATCTATTCTTGGAGATGATGGCACAGATAAGAAGAAATGTTATTTATTCAATATACCAGgtata-tattaaaccagagct---agatattgtatcttcagtttgtgcacacatgtcacacagtacactcac-caattctctatttttatctcacctgcaatgcccttttcctatggcag
||||||||||| ||||||||||| |||||||||||||| || || |||||||| ||||||||||| |||||||||||||| || ||||| | || ||||| | | |||| ||| | | || | |||| || | || | | | | | || | | || || | ||| | || |||
GCAGCGGGATCCTCTTATTGAGTATAAGCTTGAAGGCTATAACCTTTTCTTGGATATGATGGCACAAATAAGAAGAAATGTCATATATTCTGTGTATCAGgtttgctcttaatgtagatttttaggctactaggctttcaccttat---cagttattata-attataactgcgtaaccctttctttcgaactt-ttggcag-------------------
upper sequence: Vv07s0005g02610.t01 (Vitis vinifera), 5'ss of exon 20
lower sequence: GLYMA02G01060.1 (Glycine max), 5'ss of exon 20
ACAGCGGGATCCGCTTATTGAGTACAAGCTTGAAGGCTACAATCTATTCTTGGAGATGATGGCACAGATAAGAAGAAATGTTATTTATTCAATATACCAGgtatatattaaaccagagctagatattgtatcttcagtttgtgcacacatgtcacacagtacactcaccaattctctatttttatctcacctgcaatgcccttttcctatggcag
||||||||||| ||||||||||| |||||||||||||| || || |||||||| ||||||||||| |||||||||||||| || ||||| |||| ||||| | || || | ||||| || || | | | | | | ||| ||| || || | |||| | || |||
GCAGCGGGATCCACTTATTGAGTATAAGCTTGAAGGCTATAACCTTTTCTTGGATATGATGGCACAAATAAGAAGAAATGTCATATATTCTGTATATCAGgtttgcttttaatc-----tagatttttaggctactgagctttccgccttatcagttttataactgcgtaaccctttcttttgaactt-ttggcag-------------------
upper sequence: Vv07s0005g02610.t01 (Vitis vinifera), 5'ss of exon 20
lower sequence: AT4G01800.1 (Arabidopsis thaliana), 5'ss of exon 19
ACAGCGGGATCCGCTTATTGAGTACAAGCTTGAAGGCTACAATCTATTCTTGGAGATGATGGCACAGATAAGAAGAAATGTTATTTATTCAATATACCAGgta-tatattaaaccagagctagatattgtatcttcagtttgtgcacacatgtcacacagtacactcaccaattctctatttttatctcacctgcaatgcccttttcctatggcag
|| || ||||| || || ||||| ||||| ||||| ||||||||||| |||| |||||||| || ||| |||||||||| || || || ||||| ||||| | |||||| || | | || ||||| || || | | | || || | | | | | | | ||||| | ||
GCAACGCGATCCACTCATCGAGTATAAGCTCGAAGGATACAATCTATTTCTGGAAATGATGGCTCAAATACGAAGAAATGTGATATACTCCATATATCAGgttcttcattaaatcaaaacct----ctg---cttcacttcacaca-ataatttactcattcaagttttgattcttttttttttgtggcag-------------------------
upper sequence: Vv07s0005g02610.t01 (Vitis vinifera), 5'ss of exon 20
lower sequence: EFJ08380 (Selaginella moellendorffii), 5'ss of exon 19
ACAGCGGGATCCGCTTATTGAGTACAAGCTTGAAGGCTACAATCTATTCTTGGAGATGATGGCACAGATAAGAAGAAATGTTATTTATTCAATATACCAGgtatatattaaaccagagctagatattgtatcttcagtttgtgcacacatgtcacacagtacactcaccaattctctatttttatctcacctgcaatgcccttttcctatggcag
|| |||| ||||| || ||||||||||| |||||||||||||| ||| |||| |||||||| | || | | || ||||| | | || || ||| | | || || | |||| |||| | ||| | | ||| | || | || ||| || | |
TCAAAGGGACCCGCTCATCGAGTACAAGCTAGAAGGCTACAATCTTTTCCTGGACATGATGGCTCGTATCCGTCGCAACACCATTTACTGCGTCTATCAAgta---agctcgtctatccttttcat-gctccttcgttttggacttccattttgt-ctgtatgtatgaagagcatccacgcg-atagtgattgcttgatccgtgtt---------
upper sequence: Vv07s0005g02610.t01 (Vitis vinifera), 5'ss of exon 20
lower sequence: EFJ15249 (Selaginella moellendorffii), 5'ss of exon 19
ACAGCGGGATCCGCTTATTGAGTACAAGCTTGAAGGCTACAATCTATTCTTGGAGATGATGGCACAGATAAGAAGAAATGTTATTTATTCAATATACCAGgtatatattaaaccagagctagatattgtatcttcagtttgtgcacacatgtcacacagtacactcaccaattctctatttttatctcacctgcaatgcccttttcctatggcag
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CCAAAGGGACCCGCTCATCGAGTACAAGCTAGAAGGCTACAATCTTTTCCTGGACATGATGGCTCGTATCCGTCGCAACACCATTTACTGCGTCTATCAAgta---agctcgtctatccttttcat-gctccttcgttttggacttccatttcgt-ctgtatgtatgaagagcatccacgcg-atagtgattgcttgatccgtgtt---------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122690052|gb|EC947180.1|EC947180EST: TGGAGATGATGGCACAGATAAGAAGAAATGTTATTTATTCAATATACCAG TTTCAACCAGTACTAGTGAAGAATCAGGAACAACAAGAACAGAGTGAGAAA
genomic: TGGAGATGATGGCACAGATAAGAAGAAATGTTATTTATTCAATATACCAGgtatatatta ... cctatggcagTTTCAACCAGTACTAGTGAAGAATCAGGAACAACAAGAACAGAGTGAGAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACAGCGGGATCCGCTTATTGAGTACAAGCTTGAAGGCTACAATCTATTCTTGGAGATGATGGCACAGATAAGAAGAAATGTTATTTATTCAATATACCAGgtatatattaaaccagagctagatattgtatcttcagtttgtgcacacatgtcacacagtacactcaccaattctctatttttatctcacctgcaatgcccttttcctatggcag
- - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA