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GACCCTATTCCCCTGGAGCCCCCTATCTTGGACAAACTTATACAAGCAAAGTTGGCAAAAACAAAGGAACAGACTGCAGTTTCTTCATAAAACGTGGAAGgtaaaattggcaaacctttcagttgccactgctgggactatgccttacataatttcacatcctacagggtgcatttggtatatgggaatgggaatggaga...
species | Vitis vinifera |
transcript | Vv07s0005g01440.t01 |
intron # | 20 |
splice site | 5' |
intron type | U2 |
EST: GTTGGCAAAAACAAAGGAACAGACTGCAGTTTCTTCATAAAACGTGGAAG ATTCAGATGAACTATTTGAAGCTTTGTGTGGGTCACATATGGTTACAGATCEST: gi|110719153|gb|EE096802.1|EE096802
genomic: GTTGGCAAAAACAAAGGAACAGACTGCAGTTTCTTCATAAAACGTGGAAGgtaaaattgg ... atttttgtagATTCAGATGAACTATTTGAAGCTTTGTGTGGGTCACATATGGTTACAGATC
EST: CAAAAACAAAGGAACAGACTGCAGTTTCTTCATAAAACGTGGAAG ATTCAGATGAACTATTTGAAGCTTTGTGTGGGTCACATATGGTTACAGATCEST: gi|45770267|gb|CN006119.1|CN006119
genomic: CAAAAACAAAGGAACAGACTGCAGTTTCTTCATAAAACGTGGAAGgtaaaattgg ... atttttgtagATTCAGATGAACTATTTGAAGCTTTGTGTGGGTCACATATGGTTACAGATC
EST: GTTGGCAAAAACAAAGGAACAGACTGCAGTTTCTTCATAAAACGTGGAAG ATTCAGATGAACTATTTGAAGCTTTGTGTGGGTCACATATGGTTACAGATCEST: gi|71874690|gb|DT023745.1|DT023745
genomic: GTTGGCAAAAACAAAGGAACAGACTGCAGTTTCTTCATAAAACGTGGAAGgtaaaattgg ... atttttgtagATTCAGATGAACTATTTGAAGCTTTGTGTGGGTCACATATGGTTACAGATC
EST: GTTGGCAAAAACAAAGGAACAGACTGCAGTTTCTTCATAAAACGTGGAAG ATTCAGATGAACTATTTGAAGCTTTGTGTGGGTCACATATGGTTACAGATCEST: gi|34362028|gb|CF403613.1|CF403613
genomic: GTTGGCAAAAACAAAGGAACAGACTGCAGTTTCTTCATAAAACGTGGAAGgtaaaattgg ... atttttgtagATTCAGATGAACTATTTGAAGCTTTGTGTGGGTCACATATGGTTACAGATC
EST: ATAAAACGTGGAAG ATTCAGATGAACTATTTGAAGCTTTGTGTGGGTCACATATGGTTACAGATCEST: gi|22013914|gb|BQ798948.1|BQ798948
genomic: ATAAAACGTGGAAGgtaaaattgg ... atttttgtagATTCAGATGAACTATTTGAAGCTTTGTGTGGGTCACATATGGTTACAGATC
EST: GTTGGCAAAAACAAAGGAACAGACTGCAGTTTCTTCATAAAACGTGGAAG ATTCAGATGAACTATTTGAAGCTTTGTGTGGGTCACATATGGTTACAGATCEST: gi|110428353|gb|EC994822.1|EC994822
genomic: GTTGGCAAAAACAAAGGAACAGACTGCAGTTTCTTCATAAAACGTGGAAGgtaaaattgg ... atttttgtagATTCAGATGAACTATTTGAAGCTTTGTGTGGGTCACATATGGTTACAGATC
EST: GTTGGCAAAAACAAAGGAACAGACTGCAGTTTCTTCATAAAACGTGGAAG ATTCAGATGAACTATTTGAAGCTTTGTGTGGGTCACATATGGTTACAGATCEST: gi|45771559|gb|CN007411.1|CN007411
genomic: GTTGGCAAAAACAAAGGAACAGACTGCAGTTTCTTCATAAAACGTGGAAGgtaaaattgg ... atttttgtagATTCAGATGAACTATTTGAAGCTTTGTGTGGGTCACATATGGTTACAGATC
EST: GTTGGCAAAAACAAAGGAACAGACTGCAGTTTCTTCATAAAACGTGGAAG ATTCAGATGAACTATTTGAAGCTTTGTGTGGGTCACATATGGTTACAGATCEST: gi|110424565|gb|EC990929.1|EC990929
genomic: GTTGGCAAAAACAAAGGAACAGACTGCAGTTTCTTCATAAAACGTGGAAGgtaaaattgg ... atttttgtagATTCAGATGAACTATTTGAAGCTTTGTGTGGGTCACATATGGTTACAGATC
EST: GTTGGCAAAAACAAAGGAACAGACTGCAGTTTCTTCATAAAACGTGGAAG ATTCAGATGAACTATTTGAAGCTTTGTGTGGGTCACATATGGTTACAGATCEST: gi|32268218|gb|CD717377.1|CD717377
genomic: GTTGGCAAAAACAAAGGAACAGACTGCAGTTTCTTCATAAAACGTGGAAGgtaaaattgg ... atttttgtagATTCAGATGAACTATTTGAAGCTTTGTGTGGGTCACATATGGTTACAGATC
EST: GTTGGCAAAAACAAAGGAACAGACTGCAGTTTCTTCATAAAACGTGGAAG ATTCAGATGAACTATTTGAAGCTTTGTGTGGGTCACATATGEST: gi|22011563|gb|BQ796597.1|BQ796597
genomic: GTTGGCAAAAACAAAGGAACAGACTGCAGTTTCTTCATAAAACGTGGAAGgtaaaattgg ... atttttgtagATTCAGATGAACTATTTGAAGCTTTGTGTGGGTCACATATG
EST: GTTAGCAAAAACAAAGGAACAGACTGCAGTTTCTTCATAAAACGTGGAAG ATTCAGATGAACTATTTGAAGCTTTGTGTGGGTCACATATGGTTACAGATC
genomic: GTTGGCAAAAACAAAGGAACAGACTGCAGTTTCTTCATAAAACGTGGAAGgtaaaattgg ... atttttgtagATTCAGATGAACTATTTGAAGCTTTGTGTGGGTCACATATGGTTACAGATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACCCTATTCCCCTGGAGCCCCCTATCTTGGACAAACTTATACAAGCAAAGTTGGCAAAAACAAAGGAACAGACTGCAGTTTCTTCATAAAACGTGGAAGgtaaaattggcaaacctttcagttgccactgctgggactatgccttacataatttcacatcctacagggtgcatttggtatatgggaatgggaatggaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggcaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatgggaa